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publication / 2026
Connecting single-cell transcriptomes to projectomes in the mouse visual cortex
nature
Brain Science

Staci A. Sorensen, Nathan W. Gouwens, Yun Wang, Matt Mallory, Agata Budzillo, Rachel Dalley, Brian R. Lee, Olga Gliko, Hsien-chi Kuo, Xiuli Kuang, Rusty Mann, Leila Ahmadinia, Lauren Alfiler, Fahimeh Baftizadeh, Katherine S. Baker, Sarah Bannick, Darren Bertagnolli, Kris Bickley, Phil Bohn, Jasmine Bomben, Chris Bowman, Gabriella Boyer, Krissy Brouner, Dillan Brown, Alex Cahoon, Natalie Chen, Chao Chen, Kai Chen, Maggie Chvilicek, Forrest Collman, Tanya L. Daigle, Tim Dawes, Rebecca de Frates, Nick Dee, Maxwell DePartee, Tom Egdorf, Laila El-Hifnawi, Rachel Enstrom, Luke Esposito, Colin Farrell, Rohan Gala, Clare Gamlin, Amanda Gary, Andrew Glomb, Olena Gerasymchuk, Jeff Goldy, Hong Gu, Kristen Hadley, Mike Hawrylycz, Alex Henry, Dijon Hill, Karla E. Hirokawa, Zili Huang, Katelyn Johnson, Zoe Juneau, Sara Kebede, Lisa Kim, Lauren Kruse, Changkyu Lee, Arielle L. Leon, Phil Lesnar, Quinn Lheureux, Anan Li, Yaoyao Li, Elizabeth Liang, Katie Link, Michelle Maxwell, Medea McGraw, Delissa A. McMillen, Alice Mukora, Lindsay Ng, Thomas Ochoa, Aaron Oldre, Daniel Park, Christina Alice Pom, Zoran Popovich, Lydia Potekhina, Ram Rajanbabu, Shea Ransford, Melissa R. Reding, Augustin Ruiz, David Sandman, Martin Schroedter, Josh Sevigny, Lyudmila Shulga, La'Akea Siverts, Cliff R. Slaughterbeck, Kimberly A. Smith, Michelle Stoecklin, Josef Sulc, Susan M. Sunkin, Michael Tieu, Jonathan T. Ting, Jessica Trinh, Ramel Velasco, Sara Vargas, Dave Vumbaco, Miranda Walker, Micheal Wang, Adrian Wanner, Jack Waters, Mirah Wells, Grace Williams, Julia A. Wilson, Wei Xiong, Ed S. Lein, Jim Berg, Brian E. Kalmbach, Shenqin Yao, Hui Gong, Qingming Luo, Quanxin Wang, Lydia Ng, Uygar Sümbül, Zizhen Yao, Tim Jarsky, Bosiljka Tasic, Hongkui Zeng

‍

publication / 2026
Brain-wide topographic coordination of rotating waves
Science
Brain Science

Zhiwen Ye, Alexander E. Ladd, Nancy MacKenzie, Ljuvica Kolich, Anna J. Li, Daniel Birman, Matthew S. Bull, Tanya L. Daigle, Bosiljka Tasic, Hongkui Zeng, Nicholas A. Steinmetz

publication / 2026
Genoarchitecture and input–output organization of the mouse basal ganglia and thalamic parafascicular nucleus
nature neuroscience
Brain Science

Quanxin Wang, Ashwin Bhandiwad, Nathan W. Gouwens, Shenqin Yao, Yun Wang, Xiuli Kuang, Anan Li, Xiangning Li, Rachel Dalley, Hsien-Chi Kuo, Phil Lesnar, Wenjie Xu, Matt Mallory, Yaoyao Li, Laila El-Hifnawi, Leila Ahmadinia, Ben Ouellette, Lauren Kruse, Lydia Ng, Hui Gong, Qingming Luo, Michael Kunst, Cindy T. J. van Velthoven, Zizhen Yao, Staci A. Sorensen, Hongkui Zeng

‍

publication / 2026
Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks
Cell
Brain Science

Quan Jiang, Ling-Xiao Shao, Shenqin Yao, Neil K. Savalia, Amelia D. Gilbert, Pasha A. Davoudian, Jack D. Nothnagel, Guilian Tian, Tin Shing Hung, Hei Ming Lai, Kevin T. Beier, Hongkui Zeng, Alex C. Kwan

publication / 2026
Neuro-epithelial circuits promote sensory convergence and intestinal immunity
nature
Immunology

Wen Zhang, Elizabeth R. Emanuel, Hiroshi Yano, Jazib Uddin, Stephen Gaudino, Zili Xie, Hiroshi Ichise, Zhen Wang, Maureen N. Cowan, Mengze Lyu, Xiaoxiao Hou, Peng Zeng, Elin Hu, Victoria Ribeiro de Godoy, Alex Grier, Nina Estep, Julien R. Ishibashi, Stephanie Anover-Sombke, Peter J. Skene, Toufic Mayassi, Ramnik J. Xavier, Ronald N. Germain, Anna-Maria Globig, Maximilian Heeg, Ananda W. Goldrath, Brian S. Kim, Hongzhen Hu, David Artis

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publication / 2025
Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humans
nature neuroscience
Brain Science

Christian Lüscher, Valentina Emiliani, Nita Farahany, Aryn Gittis, Viviana Gradinaru, Katherine A. High, Botond Roska, José-Alain Sahel, Ofer Yizhar, Hongkui Zeng, Karl Deisseroth

publication / 2025
Continuous cell-type diversification in mouse visual cortex development
nature
Brain Science

Yuan Gao, Cindy T. J. van Velthoven, Changkyu Lee, Emma D. Thomas, Rémi Mathieu, Angela P. Ayala, Stuard Barta, Darren Bertagnolli, Jazmin Campos, Trangthanh Cardenas, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Megan Chiang, Lindsey Ching, Michael Clark, Marie J. Desierto, Rebecca Ferrer, Jessica Gloe, Jeff Goldy, Nathan Guilford, Junitta Guzman, Carliana R. Halterman, Samantha D. Hastings, Daniel Hirschstein, Windy Ho, Katelyn James, Zoe Juneau, Naomi Martin, Rachel McCue, Emma Meyerdierks, Amanda C. Mitchell, Josh S. Nagra, Beagan Nguy, Thuc Nghi Nguyen, Paul Olsen, Alana A. Oyama, Nick Pena, Jacob Quon, Qingzhong Ren, Augustin Ruiz, Nadiya V. Shapovalova, Josef Sulc, Amy Torkelson, Alex Tran, Herman Tung, Nasmil Valera Cuevas, Justin Wang, Jeanelle Ariza, Delissa A. M. McMillen, Jack Waters, Michael Kunst, Kara Ronellenfitch, Boaz Levi, Michael J. Hawrylycz, Chelsea Pagan, Nick Dee, Kimberly A. Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng

‍

publication / 2025
The new frontier in understanding human and mammalian brain development
nature
Brain Science

Tomasz J. Nowakowski, Patricia R. Nano, Katherine S. Matho, Xiaoyin Chen, Emily K. Corrigan, Wubin Ding, Yuan Gao, Matthew Heffel, Jaikishan Jayakumar, Harris S. Kaplan, Fae N. Kronman, Rothem Kovner, Camiel C. A. Mannens, Mengyi Song, Marilyn R. Steyert, Sridevi Venkatesan, Jenelle L. Wallace, Li Wang, Jonathan M. Werner, Di Zhang, Guohua Yuan, Guolong Zuo, Seth A. Ament, Carlo Colantuoni, Catherine Dulac, Rong Fan, Jesse Gillis, Arnold R. Kriegstein, Fenna M. Krienen, Yongsoo Kim, Sten Linnarsson, Partha P. Mitra, Alex A. Pollen, Nenad Sestan, Daniel J. Tward, Cindy T. J. van Velthoven, Zizhen Yao, Aparna Bhaduri, Hongkui Zeng

‍

publication / 2025
Transcriptomic and spatial organization of telencephalic GABAergic neurons
nature
Brain Science

Cindy T. J. van Velthoven, Yuan Gao, Michael Kunst, Changkyu Lee, Delissa McMillen, Anish Bhaswanth Chakka, Tamara Casper, Michael Clark, Rushil Chakrabarty, Scott Daniel, Tim Dolbeare, Rebecca Ferrer, Jessica Gloe, Jeff Goldy, Junitta Guzman, Carliana Halterman, Windy Ho, Mike J. Huang, Katelyn James, Rachel McCue, Beagan Nguy, Trangthanh Cardenas, Kara Ronellenfitch, Emma D. Thomas, Amy Torkelson, Chelsea M. Pagan, Lauren Kruse, Nick Dee, Lydia Ng, Jack Waters, Kimberly A. Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng

‍

publication / 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
nature
Immunology

Qiuyu Gong, Mehul Sharma, Marla C. Glass, Emma L. Kuan, Aishwarya Chander, Mansi Singh, Lucas T. Graybuck, Zachary J. Thomson, Christian M. LaFrance, Samir Rachid Zaim, Tao Peng, Lauren Y. Okada, Palak C. Genge, Katherine E. Henderson, Elisabeth M. Dornisch, Erik D. Layton, Peter J. Wittig, Alexander T. Heubeck, Nelson M. Mukuka, Julian Reading, Garrett Strawn, Teminijesu Titus-Adewunmi, Kathleen Abadie, Charles R. Roll, Veronica Hernandez, Vaishnavi Parthasarathy, Tyanna J. Stuckey, Blessing Musgrove, Elliott Swanson, Cara Lord, Morgan D. A. Weiss, Cole G. Phalen, Regina R. Mettey, Kevin J. Lee, John B. Johanneson, Erin K. Kawelo, Jessica Garber, Upaasana Krishnan, Megan Smithmyer, E. John Wherry, Laura A. Vella, Sarah E. Henrickson, Mackenzie S. Kopp, Adam K. Savage, Lynne A. Becker, Paul Meijer, Ernest M. Coffey, Jorg J. Goronzy, Mikael Sigvardsson, Cate Speake, Thomas F. Bumol, Ananda W. Goldrath, Troy R. Torgerson, Xiao-jun Li, Peter J. Skene, Jane H. Buckner, Claire E. Gustafson

publication / 2025
Evidence from spatial transcriptomics for the mosaic hypothesis and pure cell types in the cortex
Cell Reports
Shanahan
Brain Science

Yiliu Wang, Christof Koch, Uygar Sümbül

publication / 2025
Spontaneous pathology in PS19 tauopathy mice progresses via brain networks
Neurobiology of Disease
Brain Science

Denise M. O. Ramirez, Jennifer D. Whitesell, Nikhil Bhagwat, Talitha L. Thomas, Apoorva D. Ajay, Ariana Nawaby, Benoît Delatour, Sylvie Bay, Pierre LaFaye, Julie A. Harris, Julian P. Meeks, Marc I. Diamond

publication / 2025
Data-driven fine-grained region discovery in the mouse brain with transformers
Nature Communications
Brain Science

Alex J. Lee, Alma Dubuc, Michael Kunst, Shenqin Yao, Nicholas Lusk, Lydia Ng, Hongkui Zeng, Bosiljka Tasic, Reza Abbasi-Asl

publication / 2025
What makes the human brain special: from cellular function to clinical translation
Journal of Neurophysiology
Brain Science

Karen M. J. van Loo, Aniella Bak, Rebecca Hodge, Francesco Bedogni, Julian S. B. Ramirez, Samuel N. Emerson, Anke Höllig, Huibert D. Mansvelder, Natalia A. Goriounova, Jan-Marino Ramirez, Henner Koch

publication / 2025
The xIV-LDDMM toolkit of image-varifold based technologies for mapping 3D images and spatial-omics across scales
Communications Biology
Brain Science

Kaitlin M. Stouffer, Xiaoyin Chen, Hongkui Zeng, Benjamin Charlier, Laurent Younes, Alain Trouvé, Michael I. Miller

publication / 2025
Arousal as a universal embedding for spatiotemporal brain dynamics
Nature
Shanahan

Ryan V. Raut, Zachary P. Rosenthal, Xiaodan Wang, Hanyang Miao, Zhanqi Zhang, Jin-Moo Lee, Marcus E. Raichle, Adam Q. Bauer, Steven L. Brunton, Bingni W. Brunton, J. Nathan Kutz

publication / 2025
AAV delivery of full-length SYNGAP1 rescues epileptic and behavioral phenotypes in a mouse model of SYNGAP1-related disorders
Molecular Therapy: The Journal of the American Society of Gene Therapy
Brain Science
Brain Health

Meagan A. Quinlan, Rong Guo, Andrew G. Clark, Emily M. Luber, Robert J. Christian, Refugio A. Martinez, Erin L. Groce, Jiatai Liu, Yemeserach M. Bishaw, Ravi Bhowmik, Elizabeth Liang, Melissa Reding, Kara Ronellenfitch, Vonn Wright, Kathryn M. Gudsnuk, Jennifer M. Leedy, John K. Mich, Bryan B. Gore, Tanya L. Daigle, Manuel E. Lopez, Ed S. Lein, Justin K. Ichida, Boaz P. Levi

publication / 2025
Imaging high-frequency voltage dynamics in multiple neuron classes of behaving mammals
Cell
Brain Science

Simon Haziza, Radosław Chrapkiewicz, Yanping Zhang, Vasily Kruzhilin, Jane Li, Jizhou Li, Geoffroy Delamare, Rachel Swanson, György Buzsáki, Madhuvanthi Kannan, Ganesh Vasan, Michael Z. Lin, Hongkui Zeng, Tanya L. Daigle, Mark J. Schnitzer

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