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studio d3

building a creative, collaborative environment for the computational biologist of tomorrow

cutting-edge theory meets machine learning methods/

Studio D3 is more than a research program—it is a community built around the belief that the most transformative discoveries emerge when diverse perspectives, disciplines, and expertise come together.

‍Designed as a collaborative hub for computational and theoretical biologists, Studio D3 connects Fellows, Institute scientists, and external Affiliates through shared scientific challenges, mentorship, workshops, seminars, and community events. By creating an intellectual space for interaction, we foster a culture of Team Science where ideas are exchanged freely, collaborations form organically, and researchers work across traditional boundaries to accelerate data-driven discovery and advance our understanding of complex biological systems.

By integrating data, theory, and computation, we aim to uncover the fundamental principles that govern living systems and translate them into transformative scientific insight. 

We're building a community of computational and theoretical biologists for the Allen Institute and beyond

studio d3 community

Two professionals discuss data visualizations and charts displayed on a monitor during meeting.
Shanahan Fellowship
neuroscience has a treasure trove of data waiting to be explored
Hand pointing at thermal imaging display showing colorful heat signature map
Studio D3 Fellowship
apply math, computation, and data science to complex biological questions
ASPIRE Internship
a year-long postbaccalaureate internship

affiliates/

Affiliates are independent research leads from institutions across the globe motivated by collaboration and mentorship. Affiliates are expected to engage regularly with Allenites with ~10% time onsite helping mentor Fellows and guide projects. Affiliates have unique access to Allen community, directly engaging in projects enhancing shared networks.

studio d3 affiliates

Scott Linderman
Stanford University
Eric Shea-Brown
University of Washington

studio d3 team

Emily Borsom
Associate Scientific Program Manager
Michael Buice
Associate Director, Studio D3
Andrew Hickl
Chief Technology Officer
David Wyrick
Scientist I

recent news

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one of world’s most detailed virtual brain simulations is changing how we study the brain
Scientists use supercomputer that can process quadrillions of calculations per second to simulate mouse cortex for “virtual experiments”
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Allen Institute partners to bring open science to Africa
Computational neuroscience course, built on Allen Institute tools and data, aimed to empower next-gen researchers in Africa.
we acceleratedevelopcatalyzeimpact

science done differently. shared openly.

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brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

Brain Health

Accelerating human brain research and new therapeutic strategies for neurological conditions

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
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