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publication / 2024
Testing the Conjecture That Quantum Processes Create Conscious Experience
Entropy (Basel, Switzerland)
Brain and Consciousness

Hartmut Neven, Adam Zalcman, Peter Read, Kenneth S. Kosik, Tjitse van der Molen, Dirk Bouwmeester, Eve Bodnia, Luca Turin, Christof Koch

publication / 2024
Establishing a conceptual framework for holistic cell states and state transitions
Cell
Cell Science

Susanne M. Rafelski, Julie A. Theriot

publication / 2024
Incomplete-penetrant hypertrophic cardiomyopathy MYH7 G256E mutation causes hypercontractility and elevated mitochondrial respiration
Proceedings of the National Academy of Sciences
Cell Science

Soah Lee, Alison S. Vander Roest, Cheavar A. Blair, Kerry Kao, Samantha B. Bremner, Matthew C. Childers, Divya Pathak, Paul Heinrich, Daniel Lee, Orlando Chirikian, Saffie E. Mohran, Brock Roberts, Jacqueline E. Smith, James W. Jahng, David T. Paik, Joseph C. Wu, Ruwanthi N. Gunawardane, Kathleen M. Ruppel, David L. Mack, Beth L. Pruitt, Michael Regnier, Sean M. Wu, James A. Spudich, Daniel Bernstein

publication / 2024
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements
bioRxiv: The Preprint Server for Biology
Synthetic Biology

Florence M. Chardon, Troy A. McDiarmid, Nicholas F. Page, Riza M. Daza, Beth Martin, Silvia Domcke, Samuel G. Regalado, Jean-Benoît Lalanne, Diego Calderon, Xiaoyi Li, Lea M. Starita, Stephan J. Sanders, Nadav Ahituv, Jay Shendure

publication / 2024
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
Nature Communications
Brain Science

Kaitlin M. Stouffer, Alain Trouvé, Laurent Younes, Michael Kunst, Lydia Ng, Hongkui Zeng, Manjari Anant, Jean Fan, Yongsoo Kim, Xiaoyin Chen, Mara Rue, Michael I. Miller

publication / 2024
Whole-cortex in situ sequencing reveals input-dependent area identity
Nature
Brain Science

Xiaoyin Chen, Stephan Fischer, Mara C. P. Rue, Aixin Zhang, Didhiti Mukherjee, Patrick O. Kanold, Jesse Gillis, Anthony M. Zador

publication / 2024
Reimagining Cortical Connectivity by Deconstructing Its Molecular Logic into Building Blocks
Cold Spring Harbor Perspectives in Biology
Brain Science

Xiaoyin Chen

publication / 2024
Thalamic feedback shapes brain responses evoked by cortical stimulation in mice and humans
bioRxiv
Brain and Consciousness

Simone Russo, Leslie Claar, Lydia Marks, Giri Krishnan, Giulia Furregoni, Flavia Maria Zauli, Gabriel Hassan, Michela Solbiati, Piergiorgio d’Orio, Ezequiel Mikulan, Simone Sarasso, Mario Rosanova, Ivana Sartori, Maxim Bazhenov, Andrea Pigorini, Marcello Massimini, Christof Koch, Irene Rembado

preprint / 2024
Deciphering neuronal variability across states reveals dynamic sensory encoding
Neural Dynamics

Shailaja Akella, Peter Ledochowitsch, Joshua H. Siegle, Hannah Belski, Daniel Denman, Michael A. Buice, Severine Durand, Christof Koch, Shawn R. Olsen, Xiaoxuan Jia

publication / 2024
Lamination, Borders, and Thalamic Projections of the Primary Visual Cortex in Human, Non-Human Primate, and Rodent Brains
Brain Sciences
Brain Science

Song-Lin Ding

publication / 2024
Morpho-electric diversity of human hippocampal CA1 pyramidal neurons
Cell Reports
Brain Science

Eline J. Mertens, Yoni Leibner, Jean Pie, Anna A. Galakhova, Femke Waleboer, Julia Meijer, Tim S. Heistek, René Wilbers, Djai Heyer, Natalia A. Goriounova, Sander Idema, Matthijs B. Verhoog, Brian E. Kalmbach, Brian R. Lee, Ryder P. Gwinn, Ed S. Lein, Eleonora Aronica, Jonathan Ting, Huibert D. Mansvelder, Idan Segev, Christiaan P. J. de Kock

publication / 2024
Distributed X chromosome inactivation in brain circuitry is associated with X-linked disease penetrance of behavior
Cell Reports
Brain Science

Eric R. Szelenyi, Danielle Fisenne, Joseph E. Knox, Julie A. Harris, James A. Gornet, Ramesh Palaniswamy, Yongsoo Kim, Kannan Umadevi Venkataraju, Pavel Osten

preprint / 2024
Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings
Neural Dynamics

Zhiwen Ye, Andrew M. Shelton, Jordan R. Shaker, Julien Boussard, Jennifer Colonell, Daniel Birman, Sahar Manavi, Susu Chen, Charlie Windolf, Cole Hurwitz, Tomoyuki Namima, Federico Pedraja, Shahaf Weiss, Bogdan Raducanu, Torbjørn V. Ness, Xiaoxuan Jia, Giulia Mastroberardino, L. Federico Rossi, Matteo Carandini, Michael Häusser, Gaute T. Einevoll, Gilles Laurent, Nathaniel B. Sawtell, Wyeth Bair, Anitha Pasupathy, Carolina Mora Lopez, Barun Dutta, Liam Paninski, Joshua H. Siegle, Christof Koch, Shawn R. Olsen, Timothy D. Harris, Nicholas A. Steinmetz

publication / 2024
Topographical and cell type-specific connectivity of rostral and caudal forelimb corticospinal neuron populations
Cell Reports
Brain Science

Lina Marcela Carmona, Eric D. Thomas, Kimberly Smith, Bosiljka Tasic, Rui M. Costa, Anders Nelson

publication / 2024
Mapping human tissues with highly multiplexed RNA in situ hybridization
Nature Communications
Brain Science

Kian Kalhor, Chien-Ju Chen, Ho Suk Lee, Matthew Cai, Mahsa Nafisi, Richard Que, Carter R. Palmer, Yixu Yuan, Yida Zhang, Xuwen Li, Jinghui Song, Amanda Knoten, Blue B. Lake, Joseph P. Gaut, C. Dirk Keene, Ed Lein, Peter V. Kharchenko, Jerold Chun, Sanjay Jain, Jian-Bing Fan, Kun Zhang

publication / 2024
Structurally divergent and recurrently mutated regions of primate genomes
Cell
Brain Science

Yafei Mao, William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis, Peter A. Audano, Allison Rozanski, Xiangyu Yang, Shilong Zhang, DongAhn Yoo, David S. Gordon, Tyler Fair, Xiaoxi Wei, Glennis A. Logsdon, Marina Haukness, Philip C. Dishuck, Hyeonsoo Jeong, Ricardo Del Rosario, Vanessa L. Bauer, Will T. Fattor, Gregory K. Wilkerson, Yuxiang Mao, Yongyong Shi, Qiang Sun, Qing Lu, Benedict Paten, Trygve E. Bakken, Alex A. Pollen, Guoping Feng, Sara L. Sawyer, Wesley C. Warren, Lucia Carbone, Evan E. Eichler

publication / 2024
Modeling circuit mechanisms of opposing cortical responses to visual flow perturbations
PLoS computational biology
Brain Science

J. Galván Fraile, Franz Scherr, José J. Ramasco, Anton Arkhipov, Wolfgang Maass, Claudio R. Mirasso

publication / 2024
Behavioral strategy shapes activation of the Vip-Sst disinhibitory circuit in visual cortex
Neuron
Neural Dynamics
Brain and Consciousness
Brain Science

Alex Piet, Nick Ponvert, Douglas Ollerenshaw, Marina Garrett, Peter A. Groblewski, Shawn Olsen, Christof Koch, Anton Arkhipov

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