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publication / 2024
Distributed X chromosome inactivation in brain circuitry is associated with X-linked disease penetrance of behavior
Cell Reports
Brain Science

Eric R. Szelenyi, Danielle Fisenne, Joseph E. Knox, Julie A. Harris, James A. Gornet, Ramesh Palaniswamy, Yongsoo Kim, Kannan Umadevi Venkataraju, Pavel Osten

preprint / 2024
Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings
Neural Dynamics

Zhiwen Ye, Andrew M. Shelton, Jordan R. Shaker, Julien Boussard, Jennifer Colonell, Daniel Birman, Sahar Manavi, Susu Chen, Charlie Windolf, Cole Hurwitz, Tomoyuki Namima, Federico Pedraja, Shahaf Weiss, Bogdan Raducanu, Torbjørn V. Ness, Xiaoxuan Jia, Giulia Mastroberardino, L. Federico Rossi, Matteo Carandini, Michael Häusser, Gaute T. Einevoll, Gilles Laurent, Nathaniel B. Sawtell, Wyeth Bair, Anitha Pasupathy, Carolina Mora Lopez, Barun Dutta, Liam Paninski, Joshua H. Siegle, Christof Koch, Shawn R. Olsen, Timothy D. Harris, Nicholas A. Steinmetz

publication / 2024
Topographical and cell type-specific connectivity of rostral and caudal forelimb corticospinal neuron populations
Cell Reports
Brain Science

Lina Marcela Carmona, Eric D. Thomas, Kimberly Smith, Bosiljka Tasic, Rui M. Costa, Anders Nelson

publication / 2024
Mapping human tissues with highly multiplexed RNA in situ hybridization
Nature Communications
Brain Science

Kian Kalhor, Chien-Ju Chen, Ho Suk Lee, Matthew Cai, Mahsa Nafisi, Richard Que, Carter R. Palmer, Yixu Yuan, Yida Zhang, Xuwen Li, Jinghui Song, Amanda Knoten, Blue B. Lake, Joseph P. Gaut, C. Dirk Keene, Ed Lein, Peter V. Kharchenko, Jerold Chun, Sanjay Jain, Jian-Bing Fan, Kun Zhang

publication / 2024
Structurally divergent and recurrently mutated regions of primate genomes
Cell
Brain Science

Yafei Mao, William T. Harvey, David Porubsky, Katherine M. Munson, Kendra Hoekzema, Alexandra P. Lewis, Peter A. Audano, Allison Rozanski, Xiangyu Yang, Shilong Zhang, DongAhn Yoo, David S. Gordon, Tyler Fair, Xiaoxi Wei, Glennis A. Logsdon, Marina Haukness, Philip C. Dishuck, Hyeonsoo Jeong, Ricardo Del Rosario, Vanessa L. Bauer, Will T. Fattor, Gregory K. Wilkerson, Yuxiang Mao, Yongyong Shi, Qiang Sun, Qing Lu, Benedict Paten, Trygve E. Bakken, Alex A. Pollen, Guoping Feng, Sara L. Sawyer, Wesley C. Warren, Lucia Carbone, Evan E. Eichler

publication / 2024
Modeling circuit mechanisms of opposing cortical responses to visual flow perturbations
PLoS computational biology
Brain Science

J. Galván Fraile, Franz Scherr, José J. Ramasco, Anton Arkhipov, Wolfgang Maass, Claudio R. Mirasso

publication / 2024
Behavioral strategy shapes activation of the Vip-Sst disinhibitory circuit in visual cortex
Neuron
Neural Dynamics
Brain and Consciousness
Brain Science

Alex Piet, Nick Ponvert, Douglas Ollerenshaw, Marina Garrett, Peter A. Groblewski, Shawn Olsen, Christof Koch, Anton Arkhipov

publication / 2024
Comparison of histological delineations of medial temporal lobe cortices by four independent neuroanatomy laboratories
Hippocampus
Brain Science

Anika Wuestefeld, Hannah Baumeister, Jenna N. Adams, Robin de Flores, Carl J. Hodgetts, Negar Mazloum-Farzaghi, Rosanna K. Olsen, Vyash Puliyadi, Tammy T. Tran, Arnold Bakker, Kelsey L. Canada, Marshall A. Dalton, Ana M. Daugherty, Renaud La Joie, Lei Wang, Madigan L. Bedard, Esther Buendia, Eunice Chung, Amanda Denning, María Del Mar Arroyo-Jiménez, Emilio Artacho-Pérula, David J. Irwin, Ranjit Ittyerah, Edward B. Lee, Sydney Lim, María Del Pilar Marcos-Rabal, Maria Mercedes Iñiguez de Onzoño Martin, Monica Munoz Lopez, Carlos de la Rosa Prieto, Theresa Schuck, Winifred Trotman, Alicia Vela, Paul Yushkevich, Katrin Amunts, Jean C. Augustinack, Song-Lin Ding, Ricardo Insausti, Olga Kedo, David Berron, Laura E. M. Wisse

publication / 2024
Dopamine neuron activity encodes the length of upcoming contralateral movement sequences
Current biology: CB
Brain Science

Marcelo D. Mendonça, Joaquim Alves da Silva, Ledia F. Hernandez, Ivan Castela, José Obeso, Rui M. Costa

publication / 2024
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife
Brain Science

Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian Wickersham, Xiaoyin Chen

publication / 2024
Beyond expectations: residual dynamic mode decomposition and variance for stochastic dynamical systems
Nonlinear Dynamics
Shanahan

Matthew J. Colbrook, Qin Li, Ryan V. Raut, Alex Townsend

publication / 2024
Community-developed checklists for publishing images and image analyses
Nature Methods
Cell Science

Christopher Schmied, Michael S. Nelson, Sergiy Avilov, Gert-Jan Bakker, Cristina Bertocchi, Johanna Bischof, Ulrike Boehm, Jan Brocher, Mariana T. Carvalho, Catalin Chiritescu, Jana Christopher, Beth A. Cimini, Eduardo Conde-Sousa, Michael Ebner, Rupert Ecker, Kevin Eliceiri, Julia Fernandez-Rodriguez, Nathalie Gaudreault, Laurent Gelman, David Grunwald, Tingting Gu, Nadia Halidi, Mathias Hammer, Matthew Hartley, Marie Held, Florian Jug, Varun Kapoor, Ayse Aslihan Koksoy, Judith Lacoste, Sylvia Le Dévédec, Sylvie Le Guyader, Penghuan Liu, Gabriel G. Martins, Aastha Mathur, Kota Miura, Paula Montero Llopis, Roland Nitschke, Alison North, Adam C. Parslow, Alex Payne-Dwyer, Laure Plantard, Rizwan Ali, Britta Schroth-Diez, Lucas Schütz, Ryan T. Scott, Arne Seitz, Olaf Selchow, Ved P. Sharma, Martin Spitaler, Sathya Srinivasan, Caterina Strambio-De-Castillia, Douglas Taatjes, Christian Tischer, Helena Klara Jambor

publication / 2024
Long-term labeling and imaging of synaptically connected neuronal networks in vivo using double-deletion-mutant rabies viruses
Nature Neuroscience
Brain Science

Lei Jin, Heather A. Sullivan, Mulangma Zhu, Thomas K. Lavin, Makoto Matsuyama, Xin Fu, Nicholas E. Lea, Ran Xu, YuanYuan Hou, Luca Rutigliani, Maxwell Pruner, Kelsey R. Babcock, Jacque Pak Kan Ip, Ming Hu, Tanya L. Daigle, Hongkui Zeng, Mriganka Sur, Guoping Feng, Ian R. Wickersham

publication / 2024
Publisher Correction: Long-term labeling and imaging of synaptically connected neuronal networks in vivo using double-deletion-mutant rabies viruses
Nature Neuroscience
Brain Science

Lei Jin, Heather A. Sullivan, Mulangma Zhu, Thomas K. Lavin, Makoto Matsuyama, Xin Fu, Nicholas E. Lea, Ran Xu, YuanYuan Hou, Luca Rutigliani, Maxwell Pruner, Kelsey R. Babcock, Jacque Pak Kan Ip, Ming Hu, Tanya L. Daigle, Hongkui Zeng, Mriganka Sur, Guoping Feng, Ian R. Wickersham

publication / 2024
Understanding metric-related pitfalls in image analysis validation
Nature Methods
Cell Science

Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein

publication / 2024
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
Nature
Brain Science

Nathan R. Zemke, Ethan J. Armand, Wenliang Wang, Seoyeon Lee, Jingtian Zhou, Yang Eric Li, Hanqing Liu, Wei Tian, Joseph R. Nery, Rosa G. Castanon, Anna Bartlett, Julia K. Osteen, Daofeng Li, Xiaoyu Zhuo, Vincent Xu, Lei Chang, Keyi Dong, Hannah S. Indralingam, Jonathan A. Rink, Yang Xie, Michael Miller, Fenna M. Krienen, Qiangge Zhang, Naz Taskin, Jonathan Ting, Guoping Feng, Steven A. McCarroll, Edward M. Callaway, Ting Wang, Ed S. Lein, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

publication / 2024
Backward masking in mice requires visual cortex
Nature Neuroscience
Brain Science
Brain and Consciousness

Samuel D. Gale, Chelsea Strawder, Corbett Bennett, Stefan Mihalas, Christof Koch, Shawn R. Olsen

publication / 2024
Comparison of the connectivity of the posterior intralaminar thalamic nucleus and peripeduncular nucleus in rats and mice
Frontiers in Neural Circuits
Brain Science

Hui-Ru Cai, Sheng-Qiang Chen, Xiao-Jun Xiang, Xue-Qin Zhang, Run-Zhe Ma, Ge Zhu, Song-Lin Ding

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