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Agnes L. Bodor

Scientist III

teams /
Allenite

Agnes L. Bodor joined the Allen Institute in 2013 with over 10 years of experience in laboratory research. She is currently working to reconstruct the mouse visual cortex as a part of the neural coding group. Prior to joining the Allen Institute, Bodor was a scientist at the University of Washington where she used classical anatomical methods such as light and electron microscopy to examine the structure and connectivity of the songbird brain. Her current research interests include the use of cortical cell labels and electron microscopic serial sections to reconstruct the connectivity of the mouse visual cortex. This will help us to understand structure and connectivity in relation to function in the mammalian neocortex. Bodor received a baccalaureate degree in structural and functional neurobiology from Eötvös Loránd University in Budapest and a Ph.D. in neurobiology from Semmelweis University in Budapest, where she studied the ultrastructure of inhibitory synaptic innervation of the mammalian thalamus.

research focus

The large numbers of cortical neurons with diverse anatomical and physiological properties form millions of internal connections and also receive information from the outside world and transmit information to other areas of the central nervous system. My research group uses the mouse visual cortex as a representative animal model of the mammalian neocortex. To understand the principles of information transmission and processing in the mouse visual cortex we label functionally characterized cells and their synaptic partners, then we examine their connectivity together with all the other inputs they receive using large-scale three-dimensional reconstruction of the area at electron microscope level. Our result will help us to understand all the connections and circuits within the cortex at a level of a single synapse which later allow us to make a more accurate computational model of the mammalian neocortex, the area associated with the higher functions of our brain such as perception, generating motor command, and conscious thought.

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news
Scientists complete largest wiring diagram and functional map of the brain to date
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In what is considered the most complicated neuroscience experiment ever attempted, scientists from the Allen Institute and global collaborators have...

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featured publications

publication / 2025
The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex
Nature Neuroscience
publication / 2025
An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex
Nature Communications
publication / 2025
CAVE: Connectome Annotation Versioning Engine
Nature Methods
publication / 2025
NEURD offers automated proofreading and feature extraction for connectomics
Nature
publication / 2025
Inhibitory specificity from a connectomic census of mouse visual cortex
Nature
publication / 2025
Functional connectomics reveals general wiring rule in mouse visual cortex
Nature
publication / 2025
Perisomatic ultrastructure efficiently classifies cells in mouse cortex
Nature
publication / 2024
Ultrastructural differences impact cilia shape and external exposure across cell classes in the visual cortex
Current biology: CB
publication / 2023
Multi-layered maps of neuropil with segmentation-guided contrastive learning
Nature Methods
publication / 2022
Oligodendrocyte precursor cells ingest axons in the mouse neocortex
Proceedings of the National Academy of Sciences of the United States of America
publication / 2022
Binary and analog variation of synapses between cortical pyramidal neurons
eLife
publication / 2022
Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity
Cell
publication / 2021
Structure and function of axo-axonic inhibition
eLife
publication
Connectomics of predicted Sst transcriptomic types in mouse visual cortex
Nature
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