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publication / 2024
Comparison of histological delineations of medial temporal lobe cortices by four independent neuroanatomy laboratories
Hippocampus
Brain Science

Anika Wuestefeld, Hannah Baumeister, Jenna N. Adams, Robin de Flores, Carl J. Hodgetts, Negar Mazloum-Farzaghi, Rosanna K. Olsen, Vyash Puliyadi, Tammy T. Tran, Arnold Bakker, Kelsey L. Canada, Marshall A. Dalton, Ana M. Daugherty, Renaud La Joie, Lei Wang, Madigan L. Bedard, Esther Buendia, Eunice Chung, Amanda Denning, María Del Mar Arroyo-Jiménez, Emilio Artacho-Pérula, David J. Irwin, Ranjit Ittyerah, Edward B. Lee, Sydney Lim, María Del Pilar Marcos-Rabal, Maria Mercedes Iñiguez de Onzoño Martin, Monica Munoz Lopez, Carlos de la Rosa Prieto, Theresa Schuck, Winifred Trotman, Alicia Vela, Paul Yushkevich, Katrin Amunts, Jean C. Augustinack, Song-Lin Ding, Ricardo Insausti, Olga Kedo, David Berron, Laura E. M. Wisse

publication / 2024
Dopamine neuron activity encodes the length of upcoming contralateral movement sequences
Current biology: CB
Brain Science

Marcelo D. Mendonça, Joaquim Alves da Silva, Ledia F. Hernandez, Ivan Castela, José Obeso, Rui M. Costa

publication / 2024
Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and in situ sequencing
eLife
Brain Science

Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy T. J. van Velthoven, Heather Anne Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian Wickersham, Xiaoyin Chen

publication / 2024
Beyond expectations: residual dynamic mode decomposition and variance for stochastic dynamical systems
Nonlinear Dynamics
Shanahan

Matthew J. Colbrook, Qin Li, Ryan V. Raut, Alex Townsend

publication / 2024
Community-developed checklists for publishing images and image analyses
Nature Methods
Cell Science

Christopher Schmied, Michael S. Nelson, Sergiy Avilov, Gert-Jan Bakker, Cristina Bertocchi, Johanna Bischof, Ulrike Boehm, Jan Brocher, Mariana T. Carvalho, Catalin Chiritescu, Jana Christopher, Beth A. Cimini, Eduardo Conde-Sousa, Michael Ebner, Rupert Ecker, Kevin Eliceiri, Julia Fernandez-Rodriguez, Nathalie Gaudreault, Laurent Gelman, David Grunwald, Tingting Gu, Nadia Halidi, Mathias Hammer, Matthew Hartley, Marie Held, Florian Jug, Varun Kapoor, Ayse Aslihan Koksoy, Judith Lacoste, Sylvia Le Dévédec, Sylvie Le Guyader, Penghuan Liu, Gabriel G. Martins, Aastha Mathur, Kota Miura, Paula Montero Llopis, Roland Nitschke, Alison North, Adam C. Parslow, Alex Payne-Dwyer, Laure Plantard, Rizwan Ali, Britta Schroth-Diez, Lucas Schütz, Ryan T. Scott, Arne Seitz, Olaf Selchow, Ved P. Sharma, Martin Spitaler, Sathya Srinivasan, Caterina Strambio-De-Castillia, Douglas Taatjes, Christian Tischer, Helena Klara Jambor

publication / 2024
Long-term labeling and imaging of synaptically connected neuronal networks in vivo using double-deletion-mutant rabies viruses
Nature Neuroscience
Brain Science

Lei Jin, Heather A. Sullivan, Mulangma Zhu, Thomas K. Lavin, Makoto Matsuyama, Xin Fu, Nicholas E. Lea, Ran Xu, YuanYuan Hou, Luca Rutigliani, Maxwell Pruner, Kelsey R. Babcock, Jacque Pak Kan Ip, Ming Hu, Tanya L. Daigle, Hongkui Zeng, Mriganka Sur, Guoping Feng, Ian R. Wickersham

publication / 2024
Publisher Correction: Long-term labeling and imaging of synaptically connected neuronal networks in vivo using double-deletion-mutant rabies viruses
Nature Neuroscience
Brain Science

Lei Jin, Heather A. Sullivan, Mulangma Zhu, Thomas K. Lavin, Makoto Matsuyama, Xin Fu, Nicholas E. Lea, Ran Xu, YuanYuan Hou, Luca Rutigliani, Maxwell Pruner, Kelsey R. Babcock, Jacque Pak Kan Ip, Ming Hu, Tanya L. Daigle, Hongkui Zeng, Mriganka Sur, Guoping Feng, Ian R. Wickersham

publication / 2024
Understanding metric-related pitfalls in image analysis validation
Nature Methods
Cell Science

Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Acion, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Florian Buettner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin Kurc, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus Maier-Hein, Anne L. Martel, Erik Meijering, Bjoern Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein

publication / 2024
Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex
Nature
Brain Science

Nathan R. Zemke, Ethan J. Armand, Wenliang Wang, Seoyeon Lee, Jingtian Zhou, Yang Eric Li, Hanqing Liu, Wei Tian, Joseph R. Nery, Rosa G. Castanon, Anna Bartlett, Julia K. Osteen, Daofeng Li, Xiaoyu Zhuo, Vincent Xu, Lei Chang, Keyi Dong, Hannah S. Indralingam, Jonathan A. Rink, Yang Xie, Michael Miller, Fenna M. Krienen, Qiangge Zhang, Naz Taskin, Jonathan Ting, Guoping Feng, Steven A. McCarroll, Edward M. Callaway, Ting Wang, Ed S. Lein, M. Margarita Behrens, Joseph R. Ecker, Bing Ren

publication / 2024
Backward masking in mice requires visual cortex
Nature Neuroscience
Brain Science
Brain and Consciousness

Samuel D. Gale, Chelsea Strawder, Corbett Bennett, Stefan Mihalas, Christof Koch, Shawn R. Olsen

publication / 2024
Comparison of the connectivity of the posterior intralaminar thalamic nucleus and peripeduncular nucleus in rats and mice
Frontiers in Neural Circuits
Brain Science

Hui-Ru Cai, Sheng-Qiang Chen, Xiao-Jun Xiang, Xue-Qin Zhang, Run-Zhe Ma, Ge Zhu, Song-Lin Ding

publication / 2024
Development of a high-throughput image cytometric screening method as a research tool for immunophenotypic characterization of patient samples from clinical studies
Journal of Immunological Methods
Immunology

Samir Patel, James I. McDonald, Hamza Mohammed, Vaishnavi Parthasarathy, Veronica Hernandez, Tyanna Stuckey, Allen H. Lin, Srinivas Koushik Gundimeda, Bo Lin, Julian Reading, Leo Li-Ying Chan

publication / 2024
Editorial: 15 years of frontiers in neuroanatomy: the circuits behind the visual cortex
Frontiers in Neuroanatomy
Brain Science

Toru Takahata, Song-Lin Ding

publication / 2024
Hierarchical Bayesian inference to model continuous phenotypical progression in Alzheimer's Disease
bioRxiv
Shanahan

Anamika Agrawal, Victoria Mallett Rachleff, Kyle J. Travaglini, Shubhabrata Mukherjee, Paul Crane, Michael Hawrylycz, C. Dirk Keene, Ed Lein, Gonzalo E. Mena, Mariano I. Gabitto

publication / 2024
Information-Theoretic Tools to Understand Distributed Source Coding in Neuroscience
IEEE Journal on Selected Areas in Information Theory
Shanahan

Ariel K. Feldman, Praveen Venkatesh, Douglas J. Weber, Pulkit Grover

publication / 2024
Taste for discovery: a conversation with neuroscientist Serge Charpak
Neurophotonics
Brain Science

Jérôme Lecoq

publication / 2023
Myomatrix arrays for high-definition muscle recording
eLife
Brain Science

Bryce Chung, Muneeb Zia, Kyle A. Thomas, Jonathan A. Michaels, Amanda Jacob, Andrea Pack, Matthew J. Williams, Kailash Nagapudi, Lay Heng Teng, Eduardo Arrambide, Logan Ouellette, Nicole Oey, Rhuna Gibbs, Philip Anschutz, Jiaao Lu, Yu Wu, Mehrdad Kashefi, Tomomichi Oya, Rhonda Kersten, Alice C. Mosberger, Sean O'Connell, Runming Wang, Hugo Marques, Ana Rita Mendes, Constanze Lenschow, Gayathri Kondakath, Jeong Jun Kim, William Olson, Kiara N. Quinn, Pierce Perkins, Graziana Gatto, Ayesha Thanawalla, Susan Coltman, Taegyo Kim, Trevor Smith, Ben Binder-Markey, Martin Zaback, Christopher K. Thompson, Simon Giszter, Abigail Person, Martyn Goulding, Eiman Azim, Nitish Thakor, Daniel O'Connor, Barry Trimmer, Susana Q. Lima, Megan R. Carey, Chethan Pandarinath, Rui M. Costa, J. Andrew Pruszynski, Muhannad Bakir, Samuel J. Sober

publication / 2023
Gaussian Partial Information Decomposition: Bias Correction and Application to High-dimensional Data
Advances in Neural Information Processing Systems
Shanahan

Praveen Venkatesh, Corbett Bennett, Sam Gale, Tamina Ramirez, Greggory Heller, Severine Durand, Shawn Olsen, Stefan Mihalas

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