Perisomatic ultrastructure efficiently classifies cells in mouse cortex
Leila Elabbady, Sharmishtaa Seshamani, Shang Mu, Gayathri Mahalingam, Casey M. Schneider-Mizell, Agnes L. Bodor, J. Alexander Bae, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Sven Dorkenwald, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Eric Mitchell, Shanka Subhra Mondal, Barak Nehoran, Sergiy Popovych, William Silversmith, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Wenjing Yin, Szi-Chieh Yu, H. Sebastian Seung, R. Clay Reid, Nuno Maçarico da Costa, Forrest Collman
10.1038/s41586-024-07765-7
AIBS First Author, AIBS Last Author, Brain Science
VIP-to-SST Cell Circuit Motif Shows Differential Short-Term Plasticity across Sensory Areas of Mouse Cortex
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Jenifer Rachel, Martin Möck, Tanya L. Daigle, Bosiljka Tasic, Mirko Witte, Jochen F. Staiger
10.1523/jneurosci.0949-24.2025
Brain Science
Glutamate indicators with increased sensitivity and tailored deactivation rates
Abhi Aggarwal, Adrian Negrean, Yang Chen, Rishyashring Iyer, Daniel Reep, Anyi Liu, Anirudh Palutla, Michael E. Xie, Bryan J. MacLennan, Kenta M. Hagihara, Lucas W. Kinsey, Julianna L. Sun, Pantong Yao, Jihong Zheng, Arthur Tsang, Getahun Tsegaye, Yonghai Zhang, Ronak H. Patel, Benjamin J. Arthur, Julien Hiblot, Philipp Leippe, Miroslaw Tarnawski, Jonathan S. Marvin, Jason D. Vevea, Srinivas C. Turaga, Alison G. Tebo, Matteo Carandini, L. F. Rossi, David Kleinfeld, Arthur Konnerth, Karel Svoboda, Glenn C. Turner, Jeremy Hasseman, Kaspar Podgorski
10.1101/2025.03.20.643984
Neural Dynamics
Interneuron-specific dual-AAV SCN1A gene replacement corrects epileptic phenotypes in mouse models of Dravet syndrome
Science Translational Medicine
John K. Mich, Jiyun Ryu, Aguan D. Wei, Bryan B. Gore, Rong Guo, Angela M. Bard, Refugio A. Martinez, Emily M. Luber, Jiatai Liu, Yemeserach M. Bishaw, Robert J. Christian, Luiz M. Oliveira, Nicole Miranda, Jan-Marino Ramirez, Jonathan T. Ting, Ed S. Lein, Boaz P. Levi, Franck K. Kalume
10.1126/scitranslmed.adn5603
AIBS First Author, Brain Science
A versatile cell line for establishing potency of cell type-specific AAV transgenes
Molecular Therapy. Methods & Clinical Development
Refugio A. Martinez, Yemeserach M. Bishaw, Meagan A. Quinlan, Erin L. Groce, Bryan B. Gore, Ed S. Lein, John K. Mich, Boaz P. Levi
10.1016/j.omtm.2024.101401
AIBS First Author, AIBS Last Author, Brain Science
Provide proactive reproducible analysis transparency with every publication
Royal Society Open Science
Paul Meijer, Nicole Howard, Jessica Liang, Autumn Kelsey, Sathya Subramanian, Ed Johnson, Paul Mariz, James Harvey, Madeline Ambrose, Vitalii Tereshchenko, Aldan Beaubien, Neelima Inala, Yousef Aggoune, Stark Pister, Anne Vetto, Melissa Kinsey, Tom Bumol, Ananda Goldrath, Xiaojun Li, Troy Torgerson, Peter Skene, Lauren Okada, Christian La France, Zach Thomson, Lucas Graybuck
10.1098/rsos.241936
AIFI, Aldan Beaubien, Allen Institute for Immunology, Ananda Goldrath, Anne Vetto, Autumn Kelsey, Christian La France, Ed Johnson, Immunology, James Harvey, Jessica Liang, Lauren Okada, Lucas Graybuck, Madeline Ambrose, Melissa Kinsey, Neelima Inala, Nicole Howard, Paul Mariz, Paul Meijer, Peter Skene, Provide proactive reproducible analysis transparency with every publication, Sathya Subramanian, Stark Pister, Tom Bumol, Troy Torgerson, Vitalii Tereshchenko, Xiaojun Li, Yousef Aggoune, Zach Thomson
A large field of view 2- and 3-photon microscope
Light, Science & Applications
10.1038/s41377-025-01780-7
AIBS First Author, Brain Science
Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Sudarshan Pinglay, Jean-Benoît Lalanne, Riza M. Daza, Sanjay Kottapalli, Faaiz Quaisar, Jonas Koeppel, Riddhiman K. Garge, Xiaoyi Li, David S. Lee, Jay Shendure
Tissue-resident memory CD8 T cell diversity is spatiotemporally imprinted
Miguel Reina-Campos, Alexander Monell, Amir Ferry, Vida Luna, Kitty P. Cheung, Giovanni Galletti, Nicole E. Scharping, Kennidy K. Takehara, Sara Quon, Peter P. Challita, Brigid Boland, Yun Hsuan Lin, William H. Wong, Cynthia S. Indralingam, Hayley Neadeau, Suzie Alarcón, Gene W. Yeo, John T. Chang, Maximilian Heeg, Ananda W. Goldrath
10.1038/s41586-024-08466-x
AIFI, Alexander Monell, Allen Institute for Immunology, Amir Ferry, Ananda Goldrath, Brigid Boland, Cynthia S. Indralingam, Gene W. Yeo, Giovanni Galletti, Hayley Neadeau, Immunology, John T. Chang, Kennidy K. Takehara, Kitty P. Cheung, Maximilian Heeg, Miguel Reina-Campos, Nicole E. Scharping, Peter P. Challita, Sara Quon, Suzie Alarcon, Tissue-resident memory CD8 T cell diversity is spatiotemporally imprinted, Vida Luna, William H. Wong, Yun Hsuan Lin
Experience-dependent reorganization of inhibitory neuron synaptic connectivity
Andrew J. P. Fink, Samuel P. Muscinelli, Shuqi Wang, Marcus I. Hogan, Daniel F. English, Richard Axel, Ashok Litwin-Kumar, Carl E. Schoonover
10.1101/2025.01.16.633450
Neural Dynamics
Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex
Caroline A. McLachlan, David G. Lee, Osung Kwon, Kevin M. Delgado, Nikita Manjrekar, Zizhen Yao, Hongkui Zeng, Bosiljka Tasic, Jerry L. Chen
10.1016/j.celrep.2024.115175
Brain Science
CryoSCAPE: Scalable immune profiling using cryopreserved whole blood for multi-omic single cell and functional assays
Journal of Translational Medicine
Alexander T. Heubeck, Cole Phalen, Neel Kaul, Peter J. Wittig, Jessica Garber, Morgan Weiss, Palak C. Genge, Zachary Thomson, Claire Gustafson, Julian Reading, Peter J. Skene
10.1186/s12967-024-06010-z
AIFI, Alexander T Heubeck, Allen Institute for Immunology, Claire E Gustafson, Cole Phalen, CryoSCAPE, CryoSCAPE: Scalable immune profiling using cryopreserved whole blood for multi-omic single cell and functional assays, Immunology, Jessica Garber, Julian Reading, Morgan Weiss, Neel Kaul, Palak C Genge, Peter J Skene, Peter J. Wittig, Zachary Thomson
Brain-wide cell-type-specific transcriptomic signatures of healthy ageing in mice
Kelly Jin, Zizhen Yao, Cindy T. J. van Velthoven, Eitan S. Kaplan, Katie Glattfelder, Samuel T. Barlow, Gabriella Boyer, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Max Departee, Marie Desierto, Amanda Gary, Jessica Gloe, Jeff Goldy, Nathan Guilford, Junitta Guzman, Daniel Hirschstein, Changkyu Lee, Elizabeth Liang, Trangthanh Pham, Melissa Reding, Kara Ronellenfitch, Augustin Ruiz, Josh Sevigny, Nadiya Shapovalova, Lyudmila Shulga, Josef Sulc, Amy Torkelson, Herman Tung, Boaz Levi, Susan M. Sunkin, Nick Dee, Luke Esposito, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng
10.1038/s41586-024-08350-8
AIBS First Author, AIBS Last Author, Brain Science
Brain-wide connections of the parvicellular subdivision of the basolateral and basomedial amygdaloid nuclei in the rats
Frontiers in Neural Circuits
Ge Zhu, Sheng-Qiang Chen, Run-Zhe Ma, Hui-Ru Cai, Jin-Yuan Zhang, Yi-Min Peng, Dian Lian, Song-Lin Ding
10.3389/fncir.2025.1575232
AIBS Last Author, Brain Science
Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies
Proceedings of the ... International World-Wide Web Conference. International WWW Conference
Tek Raj Chhetri, Yaroslav O. Halchenko, Dorota Jarecka, Puja Trivedi, Satrajit S. Ghosh, Patrick Ray, Lydia Ng
10.1145/3701716.3715483
AIBS Last Author, Brain Science
Comparative transcriptomic analysis of chicken immune organs affected by Marek's disease virus infection at latency phases
Yi Ding, John Dunn, Huanmin Zhang, Keji Zhao, Jiuzhou Song
10.3389/fphys.2025.1520826
AIBS First Author, Brain Science
Comparing simulations of actin filament compression reveals tradeoff between computational cost and capturing supertwist
Blair Lyons, Saurabh S. Mogre, Karthik Vegesna, Jessica S. Yu, Mark Hansen, Aadarsh Raghunathan, Graham T. Johnson, Eran Agmon, Matthew Akamatsu
10.17912/micropub.biology.001347
Cell Science, External Collaboration, Scientific, Technical Tools
Localization and connections of the tail of caudate and caudal putamen in mouse brain
Frontiers in Neural Circuits
Run-Zhe Ma, Sheng-Qiang Chen, Ge Zhu, Hui-Ru Cai, Jin-Yuan Zhang, Yi-Min Peng, Dian Lian, Song-Lin Ding
10.3389/fncir.2025.1611199
AIBS Last Author, Brain Science
