Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search

publications

explore publications from the allen institute

latest publications

2026
2025
2024
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
Brain and Consciousness
Brain Science
Cell Science
Education
Immunology
Neural Dynamics
Seattle Hub Team
Shanahan Fellowship
Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
publication / 2025
Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits
Neuron
Brain Science
Marcus Hooper
Victoria Omstead
Sara Vargas
publication / 2025
Exploring brain circuits, one cell type-or more- at a time
Neuron
Brain Science
Bosiljka Tasic
publication / 2025
Specific targeting of brain endothelial cells using enhancer AAV vectors
Neuron
Brain Science
This is some text inside of a div block.
publication / 2025
An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex
Nature Communications
Brain Science
Agnes L. Bodor
Derrick Brittain
JoAnn Buchanan
publication / 2025
CAVE: Connectome Annotation Versioning Engine
Nature Methods
Brain Science
Shanahan
Sven Dorkenwald
Derrick Brittain
Agnes L. Bodor
publication / 2025
Layer-specific input to medial prefrontal cortex is linked to stress susceptibility
Translational Psychiatry
Brain Science
Olga Gliko
Uygar Sümbül
publication / 2025
Connectivity of single neurons classifies cell subtypes in mouse brains
Nature Methods
Brain Science
Hongkui Zeng
Michael Hawrylycz
publication / 2025
Foundation model of neural activity predicts response to new stimulus types
Nature
Brain Science
R. Clay Reid
Forrest Collman
Nuno Maçarico da Costa
publication / 2025
Functional connectomics reveals general wiring rule in mouse visual cortex
Nature
Brain Science
connectomics
Agnes L. Bodor
Derrick Brittain
JoAnn Buchanan
publication / 2025
Inhibitory specificity from a connectomic census of mouse visual cortex
Nature
Brain Science
connectomics
Agnes L. Bodor
Derrick Brittain
JoAnn Buchanan
publication / 2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience
Brain Science
Anton Arkhipov
Trygve Bakken
Corbett Bennett
publication / 2025
NEURD offers automated proofreading and feature extraction for connectomics
Nature
Brain Science
Agnes L. Bodor
Derrick Brittain
JoAnn Buchanan
publication / 2025
Perisomatic ultrastructure efficiently classifies cells in mouse cortex
Nature
Brain Science
Sharmishtaa Seshamani
Agnes L. Bodor
Derrick Brittain
publication / 2025
Enabling global image data sharing in the life sciences
Nature Methods
Cell Science
Jan Ellenberg
publication / 2025
VIP-to-SST Cell Circuit Motif Shows Differential Short-Term Plasticity across Sensory Areas of Mouse Cortex
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
Tanya L. Daigle
Bosiljka Tasic
preprint / 2025
Glutamate indicators with increased sensitivity and tailored deactivation rates
Neural Dynamics
Karel Svoboda
Kaspar Podgorski
publication / 2025
Interneuron-specific dual-AAV SCN1A gene replacement corrects epileptic phenotypes in mouse models of Dravet syndrome
Science Translational Medicine
Brain Science
Rong Guo
Boaz P. Levi
publication / 2025
A versatile cell line for establishing potency of cell type-specific AAV transgenes
Molecular Therapy. Methods & Clinical Development
Brain Science
Boaz P. Levi
Previous
load more publications

No results found, try reducing your search parameters.

we acceleratedevelopcatalyzeimpact

science done differently. shared openly.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings