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publication / 2026
Connecting single-cell transcriptomes to projectomes in the mouse visual cortex
Nature
Brain Science
MindScope

Staci A. Sorensen, Nathan W. Gouwens, Yun Wang, Matt Mallory, Agata Budzillo, Rachel Dalley, Brian R. Lee, Olga Gliko, Hsien-Chi Kuo, Xiuli Kuang, Rusty Mann, Leila Ahmadinia, Lauren Alfiler, Fahimeh Baftizadeh, Katherine S. Baker, Sarah Bannick, Darren Bertagnolli, Kris Bickley, Phil Bohn, Jasmine Bomben, Chris Bowman, Gabriella Boyer, Krissy Brouner, Dillan Brown, Alex Cahoon, Natalie Chen, Chao Chen, Kai Chen, Maggie Chvilicek, Forrest Collman, Tanya L. Daigle, Tim Dawes, Rebecca de Frates, Nick Dee, Maxwell DePartee, Tom Egdorf, Laila El-Hifnawi, Rachel Enstrom, Luke Esposito, Colin Farrell, Rohan Gala, Clare Gamlin, Amanda Gary, Andrew Glomb, Olena Gerasymchuk, Jeff Goldy, Hong Gu, Kristen Hadley, Mike Hawrylycz, Alex Henry, Dijon Hill, Karla E. Hirokawa, Zili Huang, Katelyn Johnson, Zoe Juneau, Sara Kebede, Lisa Kim, Lauren Kruse, Changkyu Lee, Arielle L. Leon, Phil Lesnar, Quinn Lheureux, Anan Li, Yaoyao Li, Elizabeth Liang, Katie Link, Michelle Maxwell, Medea McGraw, Delissa A. McMillen, Alice Mukora, Lindsay Ng, Thomas Ochoa, Aaron Oldre, Daniel Park, Christina Alice Pom, Zoran Popovich, Lydia Potekhina, Ram Rajanbabu, Shea Ransford, Melissa R. Reding, Augustin Ruiz, David Sandman, Martin Schroedter, Josh Sevigny, Lyudmila Shulga, La'Akea Siverts, Cliff R. Slaughterbeck, Kimberly A. Smith, Michelle Stoecklin, Josef Sulc, Susan M. Sunkin, Michael Tieu, Jonathan T. Ting, Jessica Trinh, Ramel Velasco, Sara Vargas, Dave Vumbaco, Miranda Walker, Micheal Wang, Adrian Wanner, Jack Waters, Mirah Wells, Grace Williams, Julia A. Wilson, Wei Xiong, Ed S. Lein, Jim Berg, Brian E. Kalmbach, Shenqin Yao, Hui Gong, Qingming Luo, Quanxin Wang, Lydia Ng, Uygar Sümbül, Zizhen Yao, Tim Jarsky, Bosiljka Tasic, Hongkui Zeng

10.1038/s41586-026-10424-8
AIBS First Author, AIBS Last Author, Brain Science
publication / 2026
Search, organize, aggregate and share image data with BioFile Finder (BFF)
Nature Methods
Brain Science
MindScope

Sean L. Meharry, Antoine Borensztejn, Nathalie Gaudreault, Jordan Lucas, Gabe Medrash, Lisa Schaefbauer, Daniel Toloudis, Anya Wallace, Brian Whitney, Lyndsay Wilhelm, Yoav Ben-Simon, Jean-Marie Burel, Jianxu Chen, Kevin W. Eliceiri, Anika Grüneboom, Koji Kyoda, Josh Moore, William Moore, Shuichi Onami, Davide Panzeri, Curtis T. Rueden, Bosiljka Tasic, Graham T. Johnson

10.1038/s41592-026-03130-w
Brain Science
publication / 2026
Whole-neuron morphology and genetic identity define cell types and reveal principles of brain-wide connectivity
Cell Reports
Brain Science
MindScope

Yun Wang, Hsien-Chi Kuo, Xiuli Kuang, Shenqin Yao, Phil Lesnar, Lydia Ng, Yaoyao Li, Laila El-Hifnawi, Natalie Chen, Kasey Zhang, Eric M. Li, Yoav Ben-Simon, Song-Lin Ding, Quanxin Wang, Totte Karlsson, Rachel Dalley, Grace Williams, Wei Xiong, Chao Chen, Kai Chen, Zili Huang, Zhi-Feng Yu, Wen-Jie Xu, Leila Ahmadinia, Sarah Walling-Bell, Julia Andrade, Olga Gliko, Matt Mallory, Colin Farrel, Ben Sutton, Kelly Jin, Zizhen Yao, Carliana Halterman, Kara Ronellenfitch, Luke Esposito, Susan Sunkin, Lauren Kruse, Qingming Luo, Hui Gong, Anan Li, Xiangning Li, Jia Qu, Hannah Choi, Stefan Mihalas, Jun Zhuang, Staci Sorensen

10.1016/j.celrep.2026.117469
AIBS First Author, AIBS Last Author, Brain Science
publication / 2026
Brain-wide topographic coordination of rotating waves
Science
Brain Science
MindScope

Zhiwen Ye, Alexander E. Ladd, Nancy MacKenzie, Ljuvica Kolich, Anna J. Li, Daniel Birman, Matthew S. Bull, Tanya L. Daigle, Bosiljka Tasic, Hongkui Zeng, Nicholas A. Steinmetz

10.1126/science.adx1369
Brain Science
preprint / 2026
Hierarchical substrates of prediction in visual cortical spiking
bioRxiv
Neural Dynamics

Jacob A. Westerberg, Yihan S. Xiong, Eli Sennesh, Hamed Nejat, David Ricci, Mazyar Azmi, Séverine Durand, Ben Hardcastle, Hannah Cabasco, Hannah Belski, Ahad Bawany, Ryan Gillis, Henry Loeffler, Carter R. Peene, Warren Han, Katrina Nguyen, Vivian Ha, Tye Johnson, Conor Grasso, Ahrial Young, Jackie Swapp, Ben Ouellette, Shiella Caldejon, Ali Williford, Peter A. Groblewski, Shawn R. Olsen, Carly Kiselycznyk, Christof Koch, Jerome A. Lecoq, Alexander Maier, André M. Bastos

10.1101/2024.10.02.616378
Neural Dynamics
publication / 2026
Traumatic brain injury and late-life Alzheimer's disease neuropathology: Quantitative investigation in the Adult Changes in Thought study
Journal of Alzheimer's disease: JAD
Brain Science
MindScope

Enna Selmanovic, Laura E. Gibbons, Rebecca D. Folkerth, C. Dirk Keene, Amber Nolan, Paul Crane, Nadia Postupna, Cecilia S. Lee, Caitlin S. Latimer, Jeanelle Ariza-Torres, Patrick R. Hof, Kristen Dams-O'Connor

10.1177/13872877261457138
Brain Science
publication / 2026
Somatic cancer variants enriched in Alzheimer's disease microglia-like cells drive inflammatory and proliferative states
Cell
Brain Science
MindScope

August Yue Huang, Zinan Zhou, Maya Talukdar, Liz Enyenihi, Michael B. Miller, Brian Chhouk, Ila Rosen, Mengyue Zheng, Minye Zhou, Averill Yang, Edward Stronge, Madel Durens, Minh Nguyen, Jaejoon Choi, Boxun Zhao, Sattar Khoshkhoo, Junho Kim, Rebecca Andersen, Zheming An, Yuchen Cheng, Javier Ganz, Levan Mekerishvili, Kyle J. Travaglini, Mariano I. Gabitto, Rebecca D. Hodge, Eitan S. Kaplan, Julia A. Belk, Dan Landau, Ed S. Lein, Philip L. De Jager, David A. Bennett, Samuele G. Marro, Eirini P. Papapetrou, Eunjung Alice Lee, Christopher A. Walsh

10.1016/j.cell.2026.03.040
Brain Science
publication / 2026
Distributed control circuits across a brain-and-cord connectome
Nature
Brain Science
MindScope

Alexander S. Bates, Jasper S. Phelps, Minsu Kim, Helen H. Yang, Arie Matsliah, Zaki Ajabi, Eric Perlman, Kevin M. Delgado, Mohammed Abdal Monium Osman, Christopher K. Salmon, Jay Gager, Benjamin Silverman, Sophia Renauld, Farzaan Salman, Janki Patel, Matthew F. Collie, Jingxuan Fan, Diego A. Pacheco, Yunzhi Zhao, Wenyi Zhang, Laia Serratosa Capdevila, Ruairí J. V. Roberts, Eva J. Munnelly, Nina Griggs, Helen Langley, Borja Moya-Llamas, Zuoyu Zhang, Ryan T. Maloney, Szi-Chieh Yu, Amy R. Sterling, Marissa Sorek, Krzysztof Kruk, Nikitas Serafetinidis, Serene Dhawan, Finja Klemm, Paul Brooks, Ellen Lesser, Jessica M. Jones, Sara E. Pierce-Lundgren, Su-Yee Lee, Yichen Luo, Andrew P. Cook, Theresa H. McKim, Dimitrios Stasi Giakoumas, Benjamin Gorko, Justin Ellis-Joyce, Jiayi Zhang, Emily C. Kophs, Tjalda Falt, Alexa M. Negron-Morales, Austin Burke, James Hebditch, Kyle P. Willie, Ryan Willie, Sergiy Popovych, Nico Kemnitz, Dodam Ih, Kisuk Lee, Ran Lu, Akhilesh Halageri, J. Alexander Bae, Ben Jourdan, Gregory Schwartzman, Damian D. Demarest, Emily Behnke, Doug Bland, Anne Kristiansen, Jaime Skelton, Tom Stocks, Dustin Garner, Anthony Hernandez, Sandeep Kumar, BANC-FlyWire Consortium, Kevin C. Daly, Sven Dorkenwald, Forrest Collman, Marie P. Suver, Lisa M. Fenk, Michael J. Pankratz, Zepeng Yao, Fei Wang, Stephen J. Huston, Tomke Stürner, Gregory S. X. E. Jefferis, Katharina Eichler, Andrew M. Seeds, Stefanie Hampel, Sweta Agrawal, Tatsuo S. Okubo, Meet Zandawala, Thomas Macrina, Diane-Yayra Adjavon, Jan Funke, John C. Tuthill, Anthony Azevedo, H. Sebastian Seung, Benjamin L. de Bivort, Mala Murthy, Jan Drugowitsch, Rachel I. Wilson, Wei-Chung Allen Lee

10.1038/s41586-026-10735-w
Brain Science
publication / 2026
Cell- and state-specific plasticity of striatal glutamatergic synapses is critical to the expression of levodopa-induced dyskinesia
Neuron
Brain Science
MindScope

Weixing Shen, Shenyu Zhai, Veronica Francardo, Qiaoling Cui, Linqing Sun, Zhong Xie, Tatiana Tkatch, Valeria Estrada Corredor, Edward S. Lein, Jonathan T. Ting, M. Angela Cenci, D. James Surmeier

10.1016/j.neuron.2026.04.023
Brain Science
publication / 2026
Neuropixels Opto: combining high-resolution electrophysiology and optogenetics
Nature Methods
Brain Science
MindScope
Neural Dynamics

Anna A. Lakunina, Karolina Z. Socha, Alexander E. Ladd, Anna J. Bowen, Susu Chen, Jennifer Colonell, Anjal Doshi, Bill Karsh, Michael Krumin, Pavel Kulik, Anna J. Li, Pieter Neutens, John O'Callaghan, Meghan Olsen, Jan Putzeys, Charu Bai Reddy, Harrie A. C. Tilmans, Sara Vargas, Marleen Welkenhuysen, Zhiwen Ye, Michael Häusser, Christof Koch, Jonathan T. Ting, Barundeb Dutta, Timothy D. Harris, Nicholas A. Steinmetz, Karel Svoboda, Joshua H. Siegle, Matteo Carandini

10.1038/s41592-026-03076-z
Brain Science, Neural Dynamics
publication / 2026
WSB.APP/PS1 mice develop age-dependent cerebral amyloid angiopathy, cerebrovascular dysfunction, and white matter deficits
Alzheimer's & Dementia: The Journal of the Alzheimer's Association
Brain Science
MindScope

Olivia J. Marola, Asli Uyar, Kelly J. Keezer, Juan Antonio K. Chong Chie, Kevin J. Elk, Abigail E. Cullen, Kierra Eldridge, Scott Persohn, Jonathan Nyandu Kanyinda, Jennifer D. Whitesell, Julie A. Harris, Paul Salama, Ashley E. Walker, Gregory W. Carter, Michael Sasner, Paul R. Territo, Gareth R. Howell, Kristen D. Onos

10.1002/alz.71476
Brain Science
preprint / 2026
Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data
bioRxiv
Neural Dynamics

Alessio P. Buccino, Arjun Sridhar, David Feng, Karel Svoboda, Joshua H. Siegle

10.1101/2025.11.12.687966
Neural Dynamics
publication / 2026
A central somatotopic map of the fly leg supports spatially targeted grooming
Current biology: CB
Brain Science
MindScope

Leila Elabbady, Grant M. Chou, Anne Sustar, Andrew Cook, Forrest Collman, John C. Tuthill

10.1016/j.cub.2026.03.045
Brain Science
preprint / 2026
Connectome simulations identify a central pattern generator circuit for fly walking
Shanahan Fellowship

Sarah M. Pugliese, Grant M. Chou, Elliott T. T. Abe, Denis Turcu, Jackson K. Lancaster, John C. Tuthill, Bingni W. Brunton

10.1101/2025.09.12.675944
publication / 2026
Genoarchitecture and input–output organization of the mouse basal ganglia and thalamic parafascicular nucleus
nature neuroscience
Brain Science

Quanxin Wang, Ashwin Bhandiwad, Nathan W. Gouwens, Shenqin Yao, Yun Wang, Xiuli Kuang, Anan Li, Xiangning Li, Rachel Dalley, Hsien-Chi Kuo, Phil Lesnar, Wenjie Xu, Matt Mallory, Yaoyao Li, Laila El-Hifnawi, Leila Ahmadinia, Ben Ouellette, Lauren Kruse, Lydia Ng, Hui Gong, Qingming Luo, Michael Kunst, Cindy T. J. van Velthoven, Zizhen Yao, Staci A. Sorensen, Hongkui Zeng

‍

publication / 2026
Pool-packaged AAV libraries exhibit extensive length-dependent and homology-dependent chimerism
Nature Biotechnology
Brain Science
MindScope

Jean-Benoît Lalanne, Chau Huynh, John K. Mich, Avery C. Hunker, Troy A. McDiarmid, Haedong Kim, Boaz P. Levi, Jonathan T. Ting, Jay Shendure

10.1038/s41587-026-03097-1
Brain Science
publication / 2026
Technical and biological sources of noise confound multiplexed enhancer AAV screening
Nature Communications
Brain Science
MindScope

Avery C. Hunker, John K. Mich, Naz Taskin, Amy Torkelson, Trangthanh Cardenas, Jean-Benoît Lalanne, Joseph T. Mahoney, Darren Bertagnolli, Anish Bhaswanth Chakka, Rushil Chakrabarty, Nicholas P. Donadio, Rebecca Ferrer, Molly Gasperini, Jeff Goldy, Junitta Guzman, Kelly Jin, Shannon Khem, Rana Kutsal, Refugio A. Martinez, Dakota Newman, Nick Pena, Christine Rimorin, Dana Rocha, Nadiya V. Shapovalova, Michael Tieu, Natalie Weed, Thomas Zhou, Rebecca Hodge, Shenqin Yao, Jay Shendure, Kimberly A. Smith, Ed S. Lein, Bosiljka Tasic, Boaz P. Levi, Jonathan T. Ting

10.1038/s41467-026-72147-8
AIBS First Author, AIBS Last Author, Brain Science
publication / 2026
The Cell Ontology in the age of single-cell omics
Scientific Data
Brain Science
MindScope

Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian Aevermann, Alida Avola, James P. Balhoff, Ismail Ugur Bayindir, Jasmine Belfiore, Anita Reane Caron, David S. Fischer, Nancy George, Benjamin M. Gyori, Melissa A. Haendel, Charles Tapley Hoyt, Huseyin Kir, Tiago Lubiana, Nicolas Matentzoglu, James A. Overton, Beverly Peng, Bjoern Peters, Ellen M. Quardokus, Patrick L. Ray, Paola Roncaglia, Andrea D. Rivera, Ray Stefancsik, Wei Kheng Teh, Sabrina Toro, Nicole Vasilevsky, Chuan Xu, Yun Zhang, Richard H. Scheuermann, Christopher J. Mungall, Alexander D. Diehl, David Osumi-Sutherland

10.1038/s41597-026-07173-8
Brain Science
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