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publication / 2025
Impaired capillary-venous drainage contributes to gliosis and demyelination in mouse white matter during aging
Nature Neuroscience
Brain Science

Stefan Stamenkovic, Franca Schmid, Gokce Gurler, Farzaneh Abolmaali, Nicolas A. Weitermann, Kevin T. Takasaki, Stephanie K. Bonney, Maria J. Sosa, Hannah C. Bennett, Yongsoo Kim, Jack Waters, Andy Y. Shih

publication / 2025
Three-photon microscopy: an emerging technique for deep intravital brain imaging
Nature Reviews. Neuroscience
Brain Science

Robert Prevedel, Júlia Ferrer Ortas, Jason N. D. Kerr, Jack Waters, Michael O. Breckwoldt, Benjamin Deneen, Michelle Monje, Stella J. Soyka, Varun Venkataramani

publication / 2025
Cholinergic neuronal activity promotes diffuse midline glioma growth through muscarinic signaling
Cell
Brain Science

Richard Drexler, Antonia Drinnenberg, Avishai Gavish, Belgin Yalçin, Kiarash Shamardani, Abigail E. Rogers, Rebecca Mancusi, Vrunda Trivedi, Kathryn R. Taylor, Yoon Seok Kim, Pamelyn J. Woo, Neeraj Soni, Minhui Su, Alexandre Ravel, Eva Tatlock, Alexandra Midler, Samuel H. Wu, Charu Ramakrishnan, Ritchie Chen, Alberto E. Ayala-Sarmiento, David Rincon Fernandez Pacheco, La'Akea Siverts, Tanya L. Daigle, Bosiljka Tasic, Hongkui Zeng, Joshua J. Breunig, Karl Deisseroth, Michelle Monje

publication / 2025
An integrated view of the relationships between amyloid, tau, and inflammatory pathophysiology in Alzheimer's disease
Alzheimer's & Dementia: The Journal of the Alzheimer's Association
Brain Science
Brain Health

Amy F. T. Arnsten, Kelly Del Tredici, Nicolas R. Barthélemy, Mariano Gabitto, Christopher H. van Dyck, Edward Lein, Heiko Braak, Dibyadeep Datta

publication / 2025
The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex
Nature Neuroscience
Brain Science

Agnes L. Bodor, Casey M. Schneider-Mizell, Chi Zhang, Leila Elabbady, Alex Mallen, Andi Bergeson, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Rachel Dalley, Clare Gamlin, Emily Joyce, Daniel Kapner, Sam Kinn, Gayathri Mahalingam, Sharmishtaa Seshamani, Shelby Suckow, Marc Takeno, Russel Torres, Wenjing Yin, J. Alexander Bae, Manuel A. Castro, Sven Dorkenwald, Akhilesh Halageri, Zhen Jia, Chris Jordan, Nico Kemnitz, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, William Silversmith, Nicholas L. Turner, Szi-Chieh Yu, William Wong, Jingpeng Wu, Brendan Celii, Luke Campagnola, Stephanie C. Seeman, Tim Jarsky, Naixin Ren, Anton Arkhipov, Jacob Reimer, H. Sebastian Seung, R. Clay Reid, Forrest Collman, Nuno Maçarico da Costa

publication / 2025
Accelerating biomedical discoveries in brain health through transformative neuropathology of aging and neurodegeneration
Neuron
Brain Science

Melissa E. Murray, Colin Smith, Vilas Menon, C. Dirk Keene, Ed Lein, Michael Hawrylycz, Adriano Aguzzi, Brett Benedetti, Katja Brose, Kelsey Caetano-Anolles, Maria Inmaculada Cobos Sillero, John F. Crary, Philip L. De Jager, Arline Faustin, Margaret E. Flanagan, Ozgun Gokce, Seth G. N. Grant, Lea T. Grinberg, David A. Gutman, Elizabeth M. C. Hillman, Zhi Huang, David J. Irwin, David T. Jones, Alifiya Kapasi, Celeste M. Karch, Walter T. Kukull, Tammaryn Lashley, Edward B. Lee, Thomas Lehner, Laura Parkkinen, Maria Pedersen, Dominique Pritchett, Matthew H. Rutledge, Julie A. Schneider, William W. Seeley, Claire E. Shepherd, Tara L. Spires-Jones, Judith A. Steen, Margaret Sutherland, Sanja Vickovic, Bin Zhang, David J. Stewart, Michael J. Keiser, Jacob W. Vogel, Brittany N. Dugger, Hemali Phatnani

publication / 2025
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
eLife
Neural Dynamics
Brain Science

Adam Glaser, Jayaram Chandrashekar, Sonya Vasquez, Cameron Arshadi, Rajvi Javeri, Naveen Ouellette, Xiaoyun Jiang, Judith Baka, Gabor Kovacs, Micah Woodard, Shamishtaa Seshamani, Kevin Cao, Nathan Clack, Andrew Recknagel, Anna Grim, Pooja Balaram, Emily Turschak, Marcus Hooper, Alan Liddell, John Rohde, Ayana Hellevik, Kevin Takasaki, Lindsey Erion Barner, Molly Logsdon, Chris Chronopoulos, Saskia EJ de Vries, Jonathan T Ting, Steven Perlmutter, Brian E Kalmbach, Nikolai Dembrow, Bosiljka Tasic, R Clay Reid, David Feng, Karel Svoboda, Melike Lakadamyali, John R Huguenard

publication / 2025
Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque
Cell Reports
Brain Science

Emily Kussick, Nelson Johansen, Naz Taskin, Ananya Chowdhury, Meagan A. Quinlan, Alex Fraser, Andrew G. Clark, Brooke Wynalda, Refugio Martinez, Erin L. Groce, Melissa Reding, Elizabeth Liang, Lyudmila Shulga, Cindy Huang, Tamara Casper, Michael Clark, Windy Ho, Yuan Gao, Cindy T. J. van Velthoven, Cassandra Sobieski, Rebecca Ferrer, Melissa R. Berg, Britni C. Curtis, Chris English, Jesse C. Day, Michal G. Fortuna, Nicholas Donadio, Dakota Newman, Shenqin Yao, Anish Bhaswanth Chakka, Jeff Goldy, Amy Torkelson, Junitta B. Guzman, Rushil Chakrabarty, Beagen Nguy, Nathan Guilford, Trangthanh H. Pham, Vonn Wright, Kara Ronellenfitch, Robyn Naidoo, Jaimie Kenney, Ali Williford, Charu Ramakrishnan, Antonia Drinnenberg, Kathryn Gudsnuk, Bargavi Thyagarajan, Kimberly A. Smith, Nick Dee, Karl Deisseroth, Hongkui Zeng, Zizhen Yao, Bosiljka Tasic, Boaz P. Levi, Rebecca Hodge, Trygve E. Bakken, Ed S. Lein, Jonathan T. Ting, Tanya L. Daigle

publication / 2025
Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
Cell Genomics
Brain Science

Nelson J. Johansen, Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper, Deepanjali Dwivedi, Ruchi Lohia, Fabien Wehbe, Bocheng Li, Darina Abaffyová, Ethan J. Armand, Julie De Man, Eren Can Ekşi, Nikolai Hecker, Gert Hulselmans, Vasilis Konstantakos, David Mauduit, John K. Mich, Gabriele Partel, Tanya L. Daigle, Boaz P. Levi, Kai Zhang, Yoshiaki Tanaka, Jesse Gillis, Jonathan T. Ting, Yoav Ben-Simon, Jeremy Miller, Joseph R. Ecker, Bing Ren, Stein Aerts, Ed S. Lein, Bosiljka Tasic, Trygve E. Bakken

publication / 2025
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
Cell
Brain Science
Cell Science

Yoav Ben-Simon, Marcus Hooper, Sujatha Narayan, Tanya L. Daigle, Deepanjali Dwivedi, Sharon W. Way, Aaron Oster, David A. Stafford, John K. Mich, Michael J. Taormina, Refugio A. Martinez, Ximena Opitz-Araya, Jada R. Roth, Jason R. Alexander, Shona Allen, Adam Amster, Joel Arbuckle, Angela Ayala, Pamela M. Baker, Trygve E. Bakken, Tyler Barcelli, Stuard Barta, Jacqueline Bendrick, Darren Bertagnolli, Cameron Bielstein, Prajal Bishwakarma, Jessica Bowlus, Gabriella Boyer, Krissy Brouner, Brittny Casian, Tamara Casper, Anish B. Chakka, Rushil Chakrabarty, Rebecca K. Chance, Sakshi Chavan, Michael Clark, Kaity Colbert, Forrest Collman, Scott Daniel, Maxwell Departee, Peter DiValentin, Nicholas Donadio, Nadezhda Dotson, Tom Egdorf, Tim Fliss, Mariano Gabitto, Jazmin Garcia, Amanda Gary, Molly Gasperini, Jessica Gloe, Jeff Goldy, Bryan B. Gore, Lucas Graybuck, Noah Greisman, Francoise Haeseleer, Carliana Halterman, Zeb Haradon, Samantha D. Hastings, Olivia Helback, Windy Ho, Dirk Hockemeyer, Cindy Huang, Sydney Huff, Avery Hunker, Nelson Johansen, Danielle Jones, Zoe Juneau, Brian Kalmbach, Madhav Kannan, Shannon Khem, Emily Kussick, Rana Kutsal, Rachael Larsen, Changkyu Lee, Angus Y. Lee, Madison Leibly, Garreck H. Lenz, Su Li, Elizabeth Liang, Nicholas Lusk, Zachary Madigan, Jessica Malloy, Jocelin Malone, Rachel McCue, Jose Melchor, Tyler Mollenkopf, Skyler Moosman, Elyse Morin, Dakota Newman, Lydia Ng, Kiet Ngo, Victoria Omstead, Sven Otto, Alana Oyama, Nick Pena, Trangthanh Pham, Elliot Phillips, Christina A. Pom, Lydia Potekhina, Shea Ransford, Patrick L. Ray, Dean Rette, Cade Reynoldson, Christine Rimorin, Dana Rocha, Augustin Ruiz, Raymond E. A. Sanchez, Lane Sawyer, Adriana Sedeno-Cortes, Joshua P. Sevigny, Nadiya Shapovalova, Noah Shepard, Lyudmila Shulga, Ana R. Sigler, La'Akea Siverts, Sherif Soliman, Saroja Somasundaram, Brian Staats, Kaiya Stewart, Eric Szelenyi, Michael Tieu, Cameron Trader, Alex Tran, Cindy T. J. van Velthoven, Miranda Walker, Yimin Wang, Natalie Weed, Morgan Wirthlin, Toren Wood, Brooke Wynalda, Zizhen Yao, Thomas Zhou, Jeanelle Ariza, Nick Dee, Melissa Reding, Kara Ronellenfitch, Shoaib Mufti, Susan M. Sunkin, Kimberly A. Smith, Luke Esposito, Jack Waters, Bargavi Thyagarajan, Shenqin Yao, Ed S. Lein, Hongkui Zeng, Boaz P. Levi, John Ngai, Jonathan T. Ting, Bosiljka Tasic

publication / 2025
Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits
Neuron
Brain Science

Avery C. Hunker, Morgan E. Wirthlin, Gursajan Gill, Nelson J. Johansen, Marcus Hooper, Victoria Omstead, Sara Vargas, M. Nathaly Lerma, Naz Taskin, Natalie Weed, William D. Laird, Yemeserach M. Bishaw, Jacqueline L. Bendrick, Bryan B. Gore, Yoav Ben-Simon, Ximena Opitz-Araya, Refugio A. Martinez, Sharon W. Way, Bargavi Thyagarajan, Sven Otto, Raymond E. A. Sanchez, Jason R. Alexander, Avalon Amaya, Adam Amster, Joel Arbuckle, Angela Ayala, Pam M. Baker, Tyler Barcelli, Stuard Barta, Darren Bertagnolli, Cameron Bielstein, Prajal Bishwakarma, Jessica Bowlus, Gabriella Boyer, Krissy Brouner, Brittny Casian, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Peter Chong, Michael Clark, Kaity Colbert, Scott Daniel, Tim Dawe, Maxwell Departee, Peter DiValentin, Nicholas P. Donadio, Nadezhda I. Dotson, Deepanjali Dwivedi, Tom Egdorf, Tim Fliss, Amanda Gary, Jeff Goldy, Conor Grasso, Erin L. Groce, Kathryn Gudsnuk, Warren Han, Zeb Haradon, Sam Hastings, Olivia Helback, Windy V. Ho, Cindy Huang, Tye Johnson, Danielle L. Jones, Zoe Juneau, Jaimie Kenney, Madison Leibly, Su Li, Elizabeth Liang, Henry Loeffler, Nicholas A. Lusk, Zachary Madigan, Jessica Malloy, Jocelin Malone, Rachel McCue, Jose Melchor, John K. Mich, Skyler Moosman, Elyse Morin, Robyn Naidoo, Dakota Newman, Kiet Ngo, Katrina Nguyen, Aaron L. Oster, Ben Ouellette, Alana A. Oyama, Nick Pena, Trangthanh Pham, Elliot Phillips, Christina Pom, Lydia Potekhina, Shea Ransford, Patrick L. Ray, Melissa Reding, Dean F. Rette, Cade Reynoldson, Christine Rimorin, Ana Rios Sigler, Dana B. Rocha, Kara Ronellenfitch, Augustin Ruiz, Lane Sawyer, Josh P. Sevigny, Nadiya V. Shapovalova, Noah Shepard, Lyudmila Shulga, Sherif Soliman, Brian Staats, Michael J. Taormina, Michael Tieu, Yimin Wang, Josh Wilkes, Toren Wood, Thomas Zhou, Ali Williford, Nick Dee, Tyler Mollenkopf, Lydia Ng, Luke Esposito, Brian E. Kalmbach, Shenqin Yao, Jeanelle Ariza, Forrest Collman, Shoaib Mufti, Kimberly Smith, Jack Waters, Ina Ersing, Marcella Patrick, Hongkui Zeng, Ed S. Lein, Yoshiko Kojima, Greg Horwitz, Scott F. Owen, Boaz P. Levi, Tanya L. Daigle, Bosiljka Tasic, Trygve E. Bakken, Jonathan T. Ting

publication / 2025
Exploring brain circuits, one cell type-or more- at a time
Neuron
Brain Science

Bosiljka Tasic, Gord Fishell

publication / 2025
Specific targeting of brain endothelial cells using enhancer AAV vectors
Neuron
Brain Science

Eric Velazquez-Rivera, Oyshi Dey, Nayoon S. Kim, Wenhao Cao, Qiao Ye, Pan Gao, Andy Thai, Jason K. Nguyen, Hai Zhang, Jonathan T. Ting, M. Gopi, Bing Ren, Todd C. Holmes, Xiangmin Xu

publication / 2025
An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex
Nature Communications
Brain Science

Marissa A. Weis, Stelios Papadopoulos, Laura Hansel, Timo Lüddecke, Brendan Celii, Paul G. Fahey, Eric Y. Wang, J. Alexander Bae, Agnes L. Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J. Bumbarger, Manuel A. Castro, Forrest Collman, Nuno Maçarico da Costa, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, R. Clay Reid, Casey M. Schneider-Mizell, H. Sebastian Seung, William Silversmith, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Wenjing Yin, Szi-Chieh Yu, Jacob Reimer, Philipp Berens, Andreas S. Tolias, Alexander S. Ecker

publication / 2025
CAVE: Connectome Annotation Versioning Engine
Nature Methods
Brain Science
Shanahan

Sven Dorkenwald, Casey M. Schneider-Mizell, Derrick Brittain, Akhilesh Halageri, Chris Jordan, Nico Kemnitz, Manual A. Castro, William Silversmith, Jeremy Maitin-Shephard, Jakob Troidl, Hanspeter Pfister, Valentin Gillet, Daniel Xenes, J. Alexander Bae, Agnes L. Bodor, JoAnn Buchanan, Daniel J. Bumbarger, Leila Elabbady, Zhen Jia, Daniel Kapner, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Marc Takeno, Russel Torres, Nicholas L. Turner, William Wong, Jingpeng Wu, Wenjing Yin, Szi-Chieh Yu, R. Clay Reid, Nuno Maçarico da Costa, H. Sebastian Seung, Forrest Collman

publication / 2025
Layer-specific input to medial prefrontal cortex is linked to stress susceptibility
Translational Psychiatry
Brain Science

Sabahaddin Taha Solakoğlu, Şefik Evren Erdener, Olga Gliko, Alp Can, Uygar Sümbül, Emine Eren-Koçak

publication / 2025
Serum Proteomic Signatures Before the Diagnosis of Rheumatoid Arthritis: Evolving Biologic Pathways and Specific Periods of Disease Development
Arthritis & Rheumatology
Immunology

Samir Rachid Zaim, Adam K. Savage, Mark A. Gillespie, Jazmine D. Castillo, Christy Bennett, Troy R. Torgerson, Lynne A. Becker, Michael Mahler, LauraKay Moss, Marie L. Feser, Jess D. Edison, Ted R. Mikuls, V. Michael Holers, Xiao-jun Li, Kevin D. Deane

publication / 2025
Connectivity of single neurons classifies cell subtypes in mouse brains
Nature Methods
Brain Science

Lijuan Liu, Zhixi Yun, Linus Manubens-Gil, Hanbo Chen, Feng Xiong, Hongwei Dong, Hongkui Zeng, Michael Hawrylycz, Giorgio A. Ascoli, Hanchuan Peng

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