Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search

publications

explore publications from the allen institute

latest publications

2026
2025
2024
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
Brain and Consciousness
Brain Science
Cell Science
Education
Immunology
Neural Dynamics
Seattle Hub Team
Shanahan Fellowship
Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
publication / 2025
Provide proactive reproducible analysis transparency with every publication
Royal Society Open Science
Immunology
Paul Meijer
Nicole Howard
Jessica Liang
publication / 2025
A large field of view 2- and 3-photon microscope
Light, Science & Applications
Brain Science
Jack Waters
publication / 2025
Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Science
Synthetic Biology
Sudarshan Pinglay
Faaiz Quaisar
Jay Shendure
publication / 2025
Tissue-resident memory CD8 T cell diversity is spatiotemporally imprinted
Nature
Immunology
Tissue Immunity
Maximilian Heeg
preprint / 2025
Adaptation, not prediction, drives neuronal spiking responses in mammalian sensory cortex
Neural Dynamics
Séverine Durand
Ben Hardcastle
Hannah Cabasco
publication / 2025
Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex
Cell Reports
Brain Science
Zizhen Yao
Hongkui Zeng
Bosiljka Tasic
publication / 2025
CryoSCAPE: Scalable immune profiling using cryopreserved whole blood for multi-omic single cell and functional assays
Journal of Translational Medicine
Immunology
Cole Phalen
Neel Kaul
Claire Gustafson
publication / 2025
Brain-wide cell-type-specific transcriptomic signatures of healthy ageing in mice
Nature
Brain Science
Kelly Jin
Zizhen Yao
Eitan S. Kaplan
publication / 2025
Brain-wide connections of the parvicellular subdivision of the basolateral and basomedial amygdaloid nuclei in the rats
Frontiers in Neural Circuits
Brain Science
Song-Lin Ding
publication / 2025
Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies
Proceedings of the ... International World-Wide Web Conference. International WWW Conference
Brain Science
Patrick Ray
Lydia Ng
publication / 2025
Comparative transcriptomic analysis of chicken immune organs affected by Marek's disease virus infection at latency phases
Frontiers in Physiology
Brain Science
Yi Ding
publication / 2025
Comparing simulations of actin filament compression reveals tradeoff between computational cost and capturing supertwist
microPublication Biology
Cell Science
Blair Lyons
publication / 2025
Localization and connections of the tail of caudate and caudal putamen in mouse brain
Frontiers in Neural Circuits
Brain Science
Song-Lin Ding
publication / 2025
Unexpected Events Trigger Task-Independent Signaling in VIP and Excitatory Neurons of Mouse Visual Cortex
iScience
Neural Dynamics
Jérôme Lecoq
publication / 2024
Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system
Nature Neuroscience
Brain Science
Trygve Bakken
Aparna Bhaduri
publication / 2024
The BRAIN initiative: a pioneering program on the precipice
Nature Neuroscience
Brain Science
Bianca Jones Marlin
Hongkui Zeng
publication / 2024
Distinctive physiology of molecularly identified medium spiny neurons in the macaque putamen
Cell Reports
Brain Science
Naz Taskin
Brian Lee
Cristina Radaelli
publication / 2024
Neuronal diversity and stereotypy at multiple scales through whole brain morphometry
Nature Communications
Brain Science
Michael Hawrylycz
Hongkui Zeng
Previous
load more publications

No results found, try reducing your search parameters.

we acceleratedevelopcatalyzeimpact

science done differently. shared openly.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings