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publication / 2025
Provide proactive reproducible analysis transparency with every publication
Royal Society Open Science
Immunology

Paul Meijer, Nicole Howard, Jessica Liang, Autumn Kelsey, Sathya Subramanian, Ed Johnson, Paul Mariz, James Harvey, Madeline Ambrose, Vitalii Tereshchenko, Aldan Beaubien, Neelima Inala, Yousef Aggoune, Stark Pister, Anne Vetto, Melissa Kinsey, Tom Bumol, Ananda Goldrath, Xiaojun Li, Troy Torgerson, Peter Skene, Lauren Okada, Christian La France, Zach Thomson, Lucas Graybuck

publication / 2025
A large field of view 2- and 3-photon microscope
Light, Science & Applications
Brain Science

Jack Waters

publication / 2025
Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Science
Synthetic Biology

Sudarshan Pinglay, Jean-Benoît Lalanne, Riza M. Daza, Sanjay Kottapalli, Faaiz Quaisar, Jonas Koeppel, Riddhiman K. Garge, Xiaoyi Li, David S. Lee, Jay Shendure

publication / 2025
Tissue-resident memory CD8 T cell diversity is spatiotemporally imprinted
Nature
Immunology
Tissue Immunity

Miguel Reina-Campos, Alexander Monell, Amir Ferry, Vida Luna, Kitty P. Cheung, Giovanni Galletti, Nicole E. Scharping, Kennidy K. Takehara, Sara Quon, Peter P. Challita, Brigid Boland, Yun Hsuan Lin, William H. Wong, Cynthia S. Indralingam, Hayley Neadeau, Suzie Alarcón, Gene W. Yeo, John T. Chang, Maximilian Heeg, Ananda W. Goldrath

preprint / 2025
Adaptation, not prediction, drives neuronal spiking responses in mammalian sensory cortex
Neural Dynamics

Jacob A. Westerberg, Yihan S. Xiong, Hamed Nejat, Eli Sennesh, Séverine Durand, Ben Hardcastle, Hannah Cabasco, Hannah Belski, Ahad Bawany, Ryan Gillis, Henry Loeffler, Carter R. Peene, Warren Han, Katrina Nguyen, Vivian Ha, Tye Johnson, Conor Grasso, Ahrial Young, Jackie Swapp, Ben Ouellette, Shiella Caldejon, Ali Williford, Peter A. Groblewski, Shawn R. Olsen, Carly Kiselycznyk, Jerome A. Lecoq, Alexander Maier, André M. Bastos

publication / 2025
Transcriptional determinants of goal-directed learning and representational drift in the parahippocampal cortex
Cell Reports
Brain Science

Caroline A. McLachlan, David G. Lee, Osung Kwon, Kevin M. Delgado, Nikita Manjrekar, Zizhen Yao, Hongkui Zeng, Bosiljka Tasic, Jerry L. Chen

publication / 2025
CryoSCAPE: Scalable immune profiling using cryopreserved whole blood for multi-omic single cell and functional assays
Journal of Translational Medicine
Immunology

Alexander T. Heubeck, Cole Phalen, Neel Kaul, Peter J. Wittig, Jessica Garber, Morgan Weiss, Palak C. Genge, Zachary Thomson, Claire Gustafson, Julian Reading, Peter J. Skene

publication / 2025
Brain-wide cell-type-specific transcriptomic signatures of healthy ageing in mice
Nature
Brain Science

Kelly Jin, Zizhen Yao, Cindy T. J. van Velthoven, Eitan S. Kaplan, Katie Glattfelder, Samuel T. Barlow, Gabriella Boyer, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Michael Clark, Max Departee, Marie Desierto, Amanda Gary, Jessica Gloe, Jeff Goldy, Nathan Guilford, Junitta Guzman, Daniel Hirschstein, Changkyu Lee, Elizabeth Liang, Trangthanh Pham, Melissa Reding, Kara Ronellenfitch, Augustin Ruiz, Josh Sevigny, Nadiya Shapovalova, Lyudmila Shulga, Josef Sulc, Amy Torkelson, Herman Tung, Boaz Levi, Susan M. Sunkin, Nick Dee, Luke Esposito, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng

publication / 2025
Brain-wide connections of the parvicellular subdivision of the basolateral and basomedial amygdaloid nuclei in the rats
Frontiers in Neural Circuits
Brain Science

Ge Zhu, Sheng-Qiang Chen, Run-Zhe Ma, Hui-Ru Cai, Jin-Yuan Zhang, Yi-Min Peng, Dian Lian, Song-Lin Ding

publication / 2025
Bridging the Scientific Knowledge Gap and Reproducibility: A Survey of Provenance, Assertion and Evidence Ontologies
Proceedings of the ... International World-Wide Web Conference. International WWW Conference
Brain Science

Tek Raj Chhetri, Yaroslav O. Halchenko, Dorota Jarecka, Puja Trivedi, Satrajit S. Ghosh, Patrick Ray, Lydia Ng

publication / 2025
Comparative transcriptomic analysis of chicken immune organs affected by Marek's disease virus infection at latency phases
Frontiers in Physiology
Brain Science

Yi Ding, John Dunn, Huanmin Zhang, Keji Zhao, Jiuzhou Song

publication / 2025
Comparing simulations of actin filament compression reveals tradeoff between computational cost and capturing supertwist
microPublication Biology
Cell Science

Blair Lyons, Saurabh S. Mogre, Karthik Vegesna, Jessica S. Yu, Mark Hansen, Aadarsh Raghunathan, Graham T. Johnson, Eran Agmon, Matthew Akamatsu

publication / 2025
Localization and connections of the tail of caudate and caudal putamen in mouse brain
Frontiers in Neural Circuits
Brain Science

Run-Zhe Ma, Sheng-Qiang Chen, Ge Zhu, Hui-Ru Cai, Jin-Yuan Zhang, Yi-Min Peng, Dian Lian, Song-Lin Ding

publication / 2025
Unexpected Events Trigger Task-Independent Signaling in VIP and Excitatory Neurons of Mouse Visual Cortex
iScience
Neural Dynamics

Farzaneh Najafi, Simone Russo, Jérôme Lecoq

publication / 2024
Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system
Nature Neuroscience
Brain Science

Igor Adameyko, Trygve Bakken, Aparna Bhaduri, Chintan Chhatbar, Mariella G. Filbin, David Gate, Hannah Hochgerner, Chang Nam Kim, Jordan Krull, Gioele La Manno, Qingyun Li, Sten Linnarsson, Qin Ma, Christian Mayer, Vilas Menon, Patricia Nano, Marco Prinz, Steve Quake, Christopher A. Walsh, Jin Yang, Omer Ali Bayraktar, Ozgun Gokce, Naomi Habib, Genevieve Konopka, Shane A. Liddelow, Tomasz J. Nowakowski

publication / 2024
The BRAIN initiative: a pioneering program on the precipice
Nature Neuroscience
Brain Science

Cory T. Miller, Xiaoke Chen, Zoe R. Donaldson, Bianca Jones Marlin, Doris Y. Tsao, Ziv M. Williams, Moriel Zelikowsky, Hongkui Zeng, Weizhe Hong

publication / 2024
Distinctive physiology of molecularly identified medium spiny neurons in the macaque putamen
Cell Reports
Brain Science

Jonathan T. Ting, Nelson J. Johansen, Brian E. Kalmbach, Naz Taskin, Brian Lee, Jason K. Clark, Rennie Kendrick, Lindsay Ng, Cristina Radaelli, Natalie Weed, Rachel Enstrom, Shea Ransford, Ingrid Redford, Sarah Walling-Bell, Rachel Dalley, Michael Tieu, Jeff Goldy, Nik Jorstad, Kimberly Smith, Trygve Bakken, Ed S. Lein, Scott F. Owen

publication / 2024
Neuronal diversity and stereotypy at multiple scales through whole brain morphometry
Nature Communications
Brain Science

Yufeng Liu, Shengdian Jiang, Yingxin Li, Sujun Zhao, Zhixi Yun, Zuo-Han Zhao, Lingli Zhang, Gaoyu Wang, Xin Chen, Linus Manubens-Gil, Yuning Hang, Qiaobo Gong, Yuanyuan Li, Penghao Qian, Lei Qu, Marta Garcia-Forn, Wei Wang, Silvia De Rubeis, Zhuhao Wu, Pavel Osten, Hui Gong, Michael Hawrylycz, Partha Mitra, Hongwei Dong, Qingming Luo, Giorgio A. Ascoli, Hongkui Zeng, Lijuan Liu, Hanchuan Peng

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