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publication / 2025
Psilocybin triggers an activity-dependent rewiring of large-scale cortical networks
Cell
Brain Science
MindScope

Quan Jiang, Ling-Xiao Shao, Shenqin Yao, Neil K. Savalia, Amelia D. Gilbert, Pasha A. Davoudian, Jack D. Nothnagel, Guilian Tian, Tin Shing Hung, Hei Ming Lai, Kevin T. Beier, Hongkui Zeng, Alex C. Kwan

10.1016/j.cell.2025.11.009
AIBS First Author, Brain Science
publication / 2025
Reconstructing the human brain's wiring diagram from axons up
Trends in Neurosciences
Brain Science
MindScope

Sarah R. Heilbronner, R. Clay Reid, Tanya K. Casta, Franco Pestilli

10.1016/j.tins.2025.11.001
Brain Science
publication / 2025
Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humans
Nature Neuroscience
Brain Science
MindScope

Christian Lüscher, Valentina Emiliani, Nita Farahany, Aryn Gittis, Viviana Gradinaru, Katherine A. High, Botond Roska, José-Alain Sahel, Ofer Yizhar, Hongkui Zeng, Karl Deisseroth

10.1038/s41593-025-02097-9
Brain Science
publication / 2025
Single-cell landscape of sex-specific drivers of Alzheimer's disease
Alzheimer's & Dementia: The Journal of the Alzheimer's Association
Brain Science
MindScope

Yiyang Wu, Kyle J. Travaglini, Mariano Gabitto, C. Dirk Keene, Amy R. Dunn, Catherine C. Kaczorowski, Philip L. De Jager, Vilas Menon, Julie A. Schneider, David A. Bennett, Logan Dumitrescu, Timothy J. Hohman

10.1002/alz.71041
Brain Science
publication / 2025
The past and future of functional connectomics
Nature Methods
Brain Science
MindScope

R. Clay Reid

10.1038/s41592-025-02971-1
AIBS First Author, Brain Science
publication / 2025
Ubiquitous predictive processing in the spectral domain of sensory cortex
eLife
Neural Dynamics

Eli Sennesh, Jacob A. Westerberg, Jesse Spencer-Smith, Andre Bastos

10.7554/elife.109053.1
Neural Dynamics
publication / 2025
The ANTsX ecosystem for mapping the mouse brain
Nature Communications
Brain Science
MindScope

Nicholas J. Tustison, Min Chen, Fae N. Kronman, Jeffrey T. Duda, Clare Gamlin, Mia G. Tustison, Michael Kunst, Rachel Dalley, Staci Sorenson, Quanxin Wang, Lydia Ng, Yongsoo Kim, James C. Gee

10.1038/s41467-025-66741-5
Brain Science
preprint / 2025
Spike inference from calcium imaging data acquired with GCaMP8 indicators
bioRxiv
Neural Dynamics

Peter Rupprecht, Márton Rózsa, Xusheng Fang, Karel Svoboda, Fritjof Helmchen

10.1101/2025.03.03.641129
Neural Dynamics
publication / 2025
Continuous cell-type diversification in mouse visual cortex development
nature
Brain Science

Yuan Gao, Cindy T. J. van Velthoven, Changkyu Lee, Emma D. Thomas, Rémi Mathieu, Angela P. Ayala, Stuard Barta, Darren Bertagnolli, Jazmin Campos, Trangthanh Cardenas, Daniel Carey, Tamara Casper, Anish Bhaswanth Chakka, Rushil Chakrabarty, Megan Chiang, Lindsey Ching, Michael Clark, Marie J. Desierto, Rebecca Ferrer, Jessica Gloe, Jeff Goldy, Nathan Guilford, Junitta Guzman, Carliana R. Halterman, Samantha D. Hastings, Daniel Hirschstein, Windy Ho, Katelyn James, Zoe Juneau, Naomi Martin, Rachel McCue, Emma Meyerdierks, Amanda C. Mitchell, Josh S. Nagra, Beagan Nguy, Thuc Nghi Nguyen, Paul Olsen, Alana A. Oyama, Nick Pena, Jacob Quon, Qingzhong Ren, Augustin Ruiz, Nadiya V. Shapovalova, Josef Sulc, Amy Torkelson, Alex Tran, Herman Tung, Nasmil Valera Cuevas, Justin Wang, Jeanelle Ariza, Delissa A. M. McMillen, Jack Waters, Michael Kunst, Kara Ronellenfitch, Boaz Levi, Michael J. Hawrylycz, Chelsea Pagan, Nick Dee, Kimberly A. Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng

‍

publication / 2025
Conservation and alteration of mammalian striatal interneurons
Nature
Brain Science
MindScope

Emily K. Corrigan, Michael DeBerardine, Aunoy Poddar, Miguel Turrero García, Sean de la O, Siting He, Harsha Sen, Mariana Duhne, Shanti Lindberg, Mengyi Song, Matthew T. Schmitz, Karen E. Sears, Ricardo Mallarino, Joshua D. Berke, Corey C. Harwell, Mercedes F. Paredes, Fenna M. Krienen, Alex A. Pollen

10.1038/s41586-025-09592-w
Brain Science
publication / 2025
Recurrent pattern completion drives the neocortical representation of sensory inference
Nature Neuroscience
Neural Dynamics

Hyeyoung Shin, Mora B. Ogando, Lamiae Abdeladim, Uday K. Jagadisan, Severine Durand, Ben Hardcastle, Hannah Belski, Hannah Cabasco, Henry Loefler, Ahad Bawany, Josh Wilkes, Katrina Nguyen, Lucas Suarez, Tye Johnson, Warren Han, Ben Ouellette, Conor Grasso, Jackie Swapp, Vivian Ha, Ahrial Young, Shiella Caldejon, Ali Williford, Peter A. Groblewski, Shawn Olsen, Carly Kiselycznyk, Jerome Lecoq, Hillel Adesnik

10.1038/s41593-025-02055-5
Neural Dynamics
publication / 2025
The new frontier in understanding human and mammalian brain development
Nature
Brain Science
MindScope

Tomasz J. Nowakowski, Patricia R. Nano, Katherine S. Matho, Xiaoyin Chen, Emily K. Corrigan, Wubin Ding, Yuan Gao, Matthew Heffel, Jaikishan Jayakumar, Harris S. Kaplan, Fae N. Kronman, Rothem Kovner, Camiel C. A. Mannens, Mengyi Song, Marilyn R. Steyert, Sridevi Venkatesan, Jenelle L. Wallace, Li Wang, Jonathan M. Werner, Di Zhang, Guohua Yuan, Guolong Zuo, Seth A. Ament, Carlo Colantuoni, Catherine Dulac, Rong Fan, Jesse Gillis, Arnold R. Kriegstein, Fenna M. Krienen, Yongsoo Kim, Sten Linnarsson, Partha P. Mitra, Alex A. Pollen, Nenad Sestan, Daniel J. Tward, Cindy T. J. van Velthoven, Zizhen Yao, Aparna Bhaduri, Hongkui Zeng

10.1038/s41586-025-09652-1
AIBS Last Author, Brain Science
publication / 2025
Transcriptomic and spatial organization of telencephalic GABAergic neurons
Nature
Brain Science
MindScope

Cindy T. J. van Velthoven, Yuan Gao, Michael Kunst, Changkyu Lee, Delissa McMillen, Anish Bhaswanth Chakka, Tamara Casper, Michael Clark, Rushil Chakrabarty, Scott Daniel, Tim Dolbeare, Rebecca Ferrer, Jessica Gloe, Jeff Goldy, Junitta Guzman, Carliana Halterman, Windy Ho, Mike J. Huang, Katelyn James, Rachel McCue, Beagan Nguy, Trangthanh Cardenas, Kara Ronellenfitch, Emma D. Thomas, Amy Torkelson, Chelsea M. Pagan, Lauren Kruse, Nick Dee, Lydia Ng, Jack Waters, Kimberly A. Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng

10.1038/s41586-025-09296-1
AIBS First Author, AIBS Last Author, Brain Science
publication / 2025
Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells
Genome Biology
Brain Science
MindScope

Ameer Sarwar, Mara Rue, Leon French, Helen Cross, Sarah Choi, Xiaoyin Chen, Jesse Gillis

10.1186/s13059-025-03747-8
Brain Science
publication / 2025
epDevAtlas: mapping GABAergic cells and microglia in the early postnatal mouse brain
Nature Communications
Brain Science
MindScope

Josephine K. Liwang, Fae N. Kronman, Hyun-Jae Pi, Yuan-Ting Wu, Daniel J. Vanselow, Steffy B. Manjila, Deniz Parmaksiz, Donghui Shin, Yoav Ben-Simon, Michael Taormina, Sharon W. Way, Hongkui Zeng, Bosiljka Tasic, Lydia Ng, Yongsoo Kim

10.1038/s41467-025-64549-x
Brain Science
publication / 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Nature
Immunology

Qiuyu Gong, Mehul Sharma, Marla C. Glass, Emma L. Kuan, Aishwarya Chander, Mansi Singh, Lucas T. Graybuck, Zachary J. Thomson, Christian M. LaFrance, Samir Rachid Zaim, Tao Peng, Lauren Y. Okada, Palak C. Genge, Katherine E. Henderson, Elisabeth M. Dornisch, Erik D. Layton, Peter J. Wittig, Alexander T. Heubeck, Nelson M. Mukuka, Julian Reading, Garrett Strawn, Teminijesu Titus-Adewunmi, Kathleen Abadie, Charles R. Roll, Veronica Hernandez, Vaishnavi Parthasarathy, Tyanna J. Stuckey, Blessing Musgrove, Elliott Swanson, Cara Lord, Morgan D. A. Weiss, Cole G. Phalen, Regina R. Mettey, Kevin J. Lee, John B. Johanneson, Erin K. Kawelo, Jessica Garber, Upaasana Krishnan, Megan Smithmyer, E. John Wherry, Laura A. Vella, Sarah E. Henrickson, Mackenzie S. Kopp, Adam K. Savage, Lynne A. Becker, Paul Meijer, Ernest M. Coffey, Jorg J. Goronzy, Mikael Sigvardsson, Cate Speake, Thomas F. Bumol, Ananda W. Goldrath, Troy R. Torgerson, Xiao-jun Li, Peter J. Skene, Jane H. Buckner, Claire E. Gustafson

10.1038/s41586-025-09686-5
Aishwarya Chander, Alexander T Heubeck, Allen Institute, Allen Institute for Immunology, Christian La France, Claire E Gustafson, Elisabeth M Dornisch, Emma L. Kuan, Erik D Layton, Garrett Strawn, Immunology, Julian Reading, Katherine Henderson, Kathleen Abadie, Lauren Y Okada, Lucas T Graybuck, Mansi Singh, Marla C. Glass, Mehul Sharma, Multi-omic profiling reveals age-related immune dynamics in healthy adults, Nelson M. Mukuka, Palak C Genge, Peter J. Wittig, Qiuyu Gong, Samir Rachid Zaim, Tao Peng, Teminijesu Titus-Adewunmi, Zachary Thomson, immune dynamics
publication / 2025
Evidence from spatial transcriptomics for the mosaic hypothesis and pure cell types in the cortex
Cell Reports
Brain Science
MindScope
Shanahan
Shanahan Fellowship

Yiliu Wang, Christof Koch, Uygar Sümbül

10.1016/j.celrep.2025.116363
Shanahan, AIBS Last Author, Brain Science
preprint / 2025
Neuropixels Opto: Combining high-resolution electrophysiology and optogenetics
bioRxiv
Neural Dynamics

Anna Lakunina, Karolina Z. Socha, Alexander Ladd, Anna J. Bowen, Susu Chen, Jennifer Colonell, Anjal Doshi, Bill Karsh, Michael Krumin, Pavel Kulik, Anna Li, Pieter Neutens, John O’Callaghan, Meghan Olsen, Jan Putzeys, Charu Bai Reddy, Harrie AC Tilmans, Sara Vargas, Marleen Welkenhuysen, Zhiwen Ye, Michael Häusser, Christof Koch, Jonathan T. Ting, Neuropixels Opto Consortium, Barundeb Dutta, Timothy D. Harris, Nicholas A. Steinmetz, Karel Svoboda, Joshua H. Siegle, Matteo Carandini

10.1101/2025.02.04.636286
Neural Dynamics
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