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people

Jay Shendure

scientific director, UW Medicine Brotman Baty Institute for Precision Medicine; scientific director, Seattle Hub for Synthetic Biology; Howard Hughes Medical Institute investigator

Leadership
Allenite
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Synthetic Biology

biography

Jay Shendure is an Investigator of the Howard Hughes Medical Institute, professor of genome sciences at the University of Washington, and Scientific Director of the Seattle Hub for Synthetic Biology and Brotman Baty Institute for Precision Medicine. His 2005 doctoral thesis with George Church included one of the first successful reductions to practice of next-generation DNA sequencing. Jay's laboratory at the University of Washington pioneered exome sequencing and its earliest applications to gene discovery for Mendelian disorders and autism; cell-free DNA diagnostics for cancer and reproductive medicine; massively parallel reporter assays, saturation genome editing; combinatorial single-cell molecular technologies; and genome editing-based molecular recording technologies. Jay is an elected member of the National Academy of Sciences, National Academy of Medicine, and the American Association for the Advancement of Science. He is also the recipient of the Curt Stern Award from the American Society of Human Genetics (2012), the Richard Lounsbery Award from the National Academy of Sciences (2019), and the Mendel Award from the European Society of Human Genetics (2022). Jay serves or previously served as a scientific advisor to the NIH Director (ACD), US Precision Medicine Initiative, National Human Genome Research Institute, Chan Zuckerberg Initiative, Gladstone Institutes, New York Genome Center, Allen Institute, openRxiv, and is on the board of directors of the Hypothesis Fund. He received his BA from Princeton University (1996) and his MD and PhD degrees from Harvard Medical School (2007)

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news
BioCentury Grand Rounds conference highlights importance of big data
The conference hosted Nobel Laureates, researchers, and biotech leaders in Seattle looking to advance better treatments in medicine
news
Karel Svoboda and Jay Shendure elected to National Academy of Medicine
The honor recognizes leaders who have demonstrated outstanding achievement and made lasting contributions to the advancement of the medical sciences,...
news
Seattle Hub for Synthetic Biology launched by Allen Institute, Chan Zuckerberg Initiative, and the University of Washington will turn cells into recording devices to unlock secrets of disease
First-of-its-kind research initiative will develop technologies to reveal how changes in cells and genes over time influence human health and...

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featured publications

preprint / 2026
Locus-Scale Massively Parallel Reporter Assays
bioRxiv
preprint / 2026
Gigabase-scale deletion scanning of the human genome
bioRxiv
preprint / 2026
Retracing and rewriting the evolutionary trajectories of mammalian developmental enhancers
bioRxiv
preprint / 2026
Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes
bioRxiv
preprint / 2025
Multiplex design and discovery of proximity handles for programmable proteome editing
bioRxiv
publication / 2025
Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Science
publication / 2025
Massively parallel characterization of transcriptional regulatory elements
nature
publication / 2024
Symbolic recording of signalling and cis-regulatory element activity to DNA
Nature
publication / 2024
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements
bioRxiv: The Preprint Server for Biology
publication / 2023
Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project
Molecular Cell
publication / 2022
A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues
Nature Methods
publication / 2014
Disruptive CHD8 mutations define a subtype of autism early in development
Cell
publication / 2014
The complete genome sequence of a Neanderthal from the Altai Mountains
Nature
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