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publication / 2020
The SONATA data format for efficient description of large-scale network models
PLoS computational biology
Brain Science
MindScope

Kael Dai, Juan Hernando, Yazan N. Billeh, Sergey L. Gratiy, Judit Planas, Andrew P. Davison, Salvador Dura-Bernal, Padraig Gleeson, Adrien Devresse, Benjamin K. Dichter, Michael Gevaert, James G. King, Werner A. H. Van Geit, Arseny V. Povolotsky, Eilif Muller, Jean-Denis Courcol, Anton Arkhipov

publication / 2020
Afferent Projections to Area Prostriata of the Mouse
Frontiers in Neuroanatomy
Brain Science
MindScope

Jin-Meng Hu, Chang-Hui Chen, Sheng-Qiang Chen, Song-Lin Ding

publication / 2020
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex
Nature Neuroscience
Brain Science
MindScope

Saskia E. J. de Vries, Jerome A. Lecoq, Michael A. Buice, Peter A. Groblewski, Gabriel K. Ocker, Michael Oliver, David Feng, Nicholas Cain, Peter Ledochowitsch, Daniel Millman, Kate Roll, Marina Garrett, Tom Keenan, Leonard Kuan, Stefan Mihalas, Shawn Olsen, Carol Thompson, Wayne Wakeman, Jack Waters, Derric Williams, Chris Barber, Nathan Berbesque, Brandon Blanchard, Nicholas Bowles, Shiella D. Caldejon, Linzy Casal, Andrew Cho, Sissy Cross, Chinh Dang, Tim Dolbeare, Melise Edwards, John Galbraith, Nathalie Gaudreault, Terri L. Gilbert, Fiona Griffin, Perry Hargrave, Robert Howard, Lawrence Huang, Sean Jewell, Nika Keller, Ulf Knoblich, Josh D. Larkin, Rachael Larsen, Chris Lau, Eric Lee, Felix Lee, Arielle Leon, Lu Li, Fuhui Long, Jennifer Luviano, Kyla Mace, Thuyanh Nguyen, Jed Perkins, Miranda Robertson, Sam Seid, Eric Shea-Brown, Jianghong Shi, Nathan Sjoquist, Cliff Slaughterbeck, David Sullivan, Ryan Valenza, Casey White, Ali Williford, Daniela M. Witten, Jun Zhuang, Hongkui Zeng, Colin Farrell, Lydia Ng, Amy Bernard, John W. Phillips, R. Clay Reid, Christof Koch

publication / 2020
Characterization of Learning, Motivation, and Visual Perception in Five Transgenic Mouse Lines Expressing GCaMP in Distinct Cell Populations
Frontiers in Behavioral Neuroscience
Brain Science
MindScope

Peter A. Groblewski, Douglas R. Ollerenshaw, Justin T. Kiggins, Marina E. Garrett, Chris Mochizuki, Linzy Casal, Sissy Cross, Kyla Mace, Jackie Swapp, Sahar Manavi, Derric Williams, Stefan Mihalas, Shawn R. Olsen

publication / 2020
Contextual Integration in Cortical and Convolutional Neural Networks
Frontiers in Computational Neuroscience
Brain Science
MindScope

Ramakrishnan Iyer, Brian Hu, Stefan Mihalas

publication / 2020
Homotopic Commissural Projections of Area Prostriata in Rat and Mouse: Comparison With Presubiculum and Parasubiculum
Frontiers in Neural Circuits
Brain Science
MindScope

Chang-Hui Chen, Jin-Meng Hu, Sheng-Qiang Chen, Shi-Ming Liu, Song-Lin Ding

publication / 2020
In vivo X-ray diffraction and simultaneous EMG reveal the time course of myofilament lattice dilation and filament stretch
Journal of Experimental Biology
Cell Science

S. Malingen, A. Asencio, J. Cass, Weikang Ma, T. Irving, T. Daniel

publication / 2020
Projection-specific Activity of Layer 2/3 Neurons Imaged in Mouse Primary Somatosensory Barrel Cortex During a Whisker Detection Task
Function (Oxford, England)
Brain Science
MindScope

Angeliki Vavladeli, Tanya Daigle, Hongkui Zeng, Sylvain Crochet, Carl C. H. Petersen

publication / 2020
Separation of hemodynamic signals from GCaMP fluorescence measured with wide-field imaging
Journal of Neurophysiology
Brain Science
MindScope

M. T. Valley, M. G. Moore, J. Zhuang, N. Mesa, D. Castelli, D. Sullivan, M. Reimers, J. Waters

publication / 2019
Individual structural features constrain the mouse functional connectome
Proceedings of the National Academy of Sciences of the United States of America
Brain Science
MindScope

Francesca Melozzi, Eyal Bergmann, Julie A. Harris, Itamar Kahn, Viktor Jirsa, Christophe Bernard

publication / 2019
Sex-Based Analysis of De Novo Variants in Neurodevelopmental Disorders
American Journal of Human Genetics
Brain Science
MindScope

Tychele N. Turner, Amy B. Wilfert, Trygve E. Bakken, Raphael A. Bernier, Micah R. Pepper, Zhancheng Zhang, Rebecca I. Torene, Kyle Retterer, Evan E. Eichler

publication / 2019
Progress update from the hippocampal subfields group
Alzheimer's & Dementia (Amsterdam, Netherlands)
Brain Science
MindScope

Rosanna K. Olsen, Valerie A. Carr, Ana M. Daugherty, Renaud La Joie, Robert S. C. Amaral, Katrin Amunts, Jean C. Augustinack, Arnold Bakker, Andrew R. Bender, David Berron, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, M. Mallar Chakravarty, Gaël Chételat, Robin de Flores, Jordan DeKraker, Song-Lin Ding, Mirjam I. Geerlings, Yushan Huang, Ricardo Insausti, Elliott G. Johnson, Prabesh Kanel, Olga Kedo, Kristen M. Kennedy, Attila Keresztes, Joshua K. Lee, Ulman Lindenberger, Susanne G. Mueller, Elizabeth M. Mulligan, Noa Ofen, Daniela J. Palombo, Lorenzo Pasquini, John Pluta, Naftali Raz, Karen M. Rodrigue, Margaret L. Schlichting, Yee Lee Shing, Craig E. L. Stark, Trevor A. Steve, Nanthia A. Suthana, Lei Wang, Markus Werkle-Bergner, Paul A. Yushkevich, Qijing Yu, Laura E. M. Wisse, Hippocampal Subfields Group

publication / 2019
Visual Cortex Gains Independence from Peripheral Drive before Eye Opening
Neuron
Brain Science
MindScope

Alexandra Gribizis, Xinxin Ge, Tanya L. Daigle, James B. Ackman, Hongkui Zeng, Daeyeol Lee, Michael C. Crair

publication / 2019
Genetic Identification of Vagal Sensory Neurons That Control Feeding
Cell
Brain Science
MindScope

Ling Bai, Sheyda Mesgarzadeh, Karthik S. Ramesh, Erica L. Huey, Yin Liu, Lindsay A. Gray, Tara J. Aitken, Yiming Chen, Lisa R. Beutler, Jamie S. Ahn, Linda Madisen, Hongkui Zeng, Mark A. Krasnow, Zachary A. Knight

publication / 2019
Wide. Fast. Deep: Recent Advances in Multiphoton Microscopy of In Vivo Neuronal Activity
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Jérôme Lecoq, Natalia Orlova, Benjamin F. Grewe

publication / 2019
Single-cell transcriptomic evidence for dense intracortical neuropeptide networks
eLife
Brain Science
MindScope

Stephen J. Smith, Uygar Sümbül, Lucas T. Graybuck, Forrest Collman, Sharmishtaa Seshamani, Rohan Gala, Olga Gliko, Leila Elabbady, Jeremy A. Miller, Trygve E. Bakken, Jean Rossier, Zizhen Yao, Ed Lein, Hongkui Zeng, Bosiljka Tasic, Michael Hawrylycz

publication / 2019
DLITE Uses Cell-Cell Interface Movement to Better Infer Cell-Cell Tensions
Biophysical Journal
Cell Science

Ritvik Vasan, Mary M. Maleckar, C. David Williams, Padmini Rangamani

publication / 2019
Dual-plane 3-photon microscopy with remote focusing
Biomedical Optics Express
Brain Science
MindScope

Kevin T. Takasaki, Dmitri Tsyboulski, Jack Waters

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