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publication / 2019
Hierarchical organization of cortical and thalamic connectivity
Nature
Brain Science
MindScope

Julie A. Harris, Stefan Mihalas, Karla E. Hirokawa, Jennifer D. Whitesell, Hannah Choi, Amy Bernard, Phillip Bohn, Shiella Caldejon, Linzy Casal, Andrew Cho, Aaron Feiner, David Feng, Nathalie Gaudreault, Charles R. Gerfen, Nile Graddis, Peter A. Groblewski, Alex M. Henry, Anh Ho, Robert Howard, Joseph E. Knox, Leonard Kuan, Xiuli Kuang, Jerome Lecoq, Phil Lesnar, Yaoyao Li, Jennifer Luviano, Stephen McConoughey, Marty T. Mortrud, Maitham Naeemi, Lydia Ng, Seung Wook Oh, Benjamin Ouellette, Elise Shen, Staci A. Sorensen, Wayne Wakeman, Quanxin Wang, Yun Wang, Ali Williford, John W. Phillips, Allan R. Jones, Christof Koch, Hongkui Zeng

publication / 2019
Kilohertz two-photon brain imaging in awake mice
Nature Methods
Brain Science
MindScope

Tong Zhang, Oscar Hernandez, Radosław Chrapkiewicz, Adam Shai, Mark J. Wagner, Yanping Zhang, Cheng-Hsun Wu, Jin Zhong Li, Masatoshi Inoue, Yiyang Gong, Biafra Ahanonu, Hongkui Zeng, Haruhiko Bito, Mark J. Schnitzer

publication / 2019
Definitions, methods, and applications in interpretable machine learning
Proceedings of the National Academy of Sciences of the United States of America
Brain Science
MindScope

W. James Murdoch, Chandan Singh, Karl Kumbier, Reza Abbasi-Asl, Bin Yu

publication / 2019
A perspective on Microscopy Metadata: data provenance and quality control
Cell Science

Maximiliaan Huisman, Mathias Hammer, Alex Rigano, Ulrike Boehm, James J. Chambers, Nathalie Gaudreault, Alison J. North, Jaime A. Pimentel, Damir Sudar, Peter Bajcsy, Claire M. Brown, Alexander D. Corbett, Orestis Faklaris, Judith Lacoste, Alex Laude, Glyn Nelson, Roland Nitschke, David Grunwald, Caterina Strambio-De-Castillia

publication / 2019
Neural precursors of decisions that matter-an ERP study of deliberate and arbitrary choice
eLife
Brain Science
MindScope

Uri Maoz, Gideon Yaffe, Christof Koch, Liad Mudrik

publication / 2019
Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior
Cell
Brain Science
MindScope

Dong-Wook Kim, Zizhen Yao, Lucas T. Graybuck, Tae Kyung Kim, Thuc Nghi Nguyen, Kimberly A. Smith, Olivia Fong, Lynn Yi, Noushin Koulena, Nico Pierson, Sheel Shah, Liching Lo, Allan-Hermann Pool, Yuki Oka, Lior Pachter, Long Cai, Bosiljka Tasic, Hongkui Zeng, David J. Anderson

publication / 2019
Mouse embryo geometry drives formation of robust signaling gradients through receptor localization
Nature Communications
Brain Science
MindScope

Zhechun Zhang, Steven Zwick, Ethan Loew, Joshua S. Grimley, Sharad Ramanathan

publication / 2019
Aberration-free multi-plane imaging of neural activity from the mammalian brain using a fast-switching liquid crystal spatial light modulator
Biomedical Optics Express
Brain Science
MindScope

Rui Liu, Neil Ball, James Brockill, Leonard Kuan, Daniel Millman, Cassandra White, Arielle Leon, Derric Williams, Shig Nishiwaki, Saskia de Vries, Josh Larkin, David Sullivan, Cliff Slaughterbeck, Colin Farrell, Peter Saggau

publication / 2019
Single-trial neural dynamics are dominated by richly varied movements
Nature Neuroscience
Neural Dynamics

Simon Musall, Matthew T. Kaufman, Ashley L. Juavinett, Steven Gluf, Anne K. Churchland

publication / 2019
Automatic navigation system for the mouse brain
The Journal of Comparative Neurology
Brain Science
MindScope

Susan J. Tappan, Brian S. Eastwood, Nathan O'Connor, Quanxin Wang, Lydia Ng, David Feng, Bryan M. Hooks, Charles R. Gerfen, Patrick R. Hof, Christoph Schmitz, Jack R. Glaser

publication / 2019
Conserved cell types with divergent features in human versus mouse cortex
Nature
Brain Science
MindScope

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard G. Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder P. Gwinn, Daniel Hirschstein, C. Dirk Keene, Mohamed Keshk, Andrew L. Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey G. Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya V. Shapovalova, Saroja Somasundaram, Aaron Szafer, Elliot R. Thomsen, Michael Tieu, Gerald Quon, Richard H. Scheuermann, Rafael Yuste, Susan M. Sunkin, Boudewijn Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John W. Phillips, Bosiljka Tasic, Hongkui Zeng, Allan R. Jones, Christof Koch, Ed S. Lein

publication / 2019
New insights into the development of the human cerebral cortex
Journal of Anatomy
Brain Science
MindScope

Zoltán Molnár, Gavin J. Clowry, Nenad Šestan, Ayman Alzu'bi, Trygve Bakken, Robert F. Hevner, Petra S. Hüppi, Ivica Kostović, Pasko Rakic, E. S. Anton, David Edwards, Patricia Garcez, Anna Hoerder-Suabedissen, Arnold Kriegstein

publication / 2019
Whole brain imaging reveals distinct spatial patterns of amyloid beta deposition in three mouse models of Alzheimer's disease
The Journal of Comparative Neurology
Brain Science
MindScope

Jennifer D. Whitesell, Alex R. Buckley, Joseph E. Knox, Leonard Kuan, Nile Graddis, Andrew Pelos, Alice Mukora, Wayne Wakeman, Phillip Bohn, Anh Ho, Karla E. Hirokawa, Julie A. Harris

publication / 2019
Bright and photostable chemigenetic indicators for extended in vivo voltage imaging
Science (New York, N.Y.)
Brain Science
MindScope

Ahmed S. Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C. Seeman, Jianing Yu, Jihong Zheng, Jonathan B. Grimm, Ronak Patel, Johannes Friedrich, Brett D. Mensh, Liam Paninski, John J. Macklin, Gabe J. Murphy, Kaspar Podgorski, Bei-Jung Lin, Tsai-Wen Chen, Glenn C. Turner, Zhe Liu, Minoru Koyama, Karel Svoboda, Misha B. Ahrens, Luke D. Lavis, Eric R. Schreiter

publication / 2019
Automated segmentation of medial temporal lobe subregions on in vivo T1-weighted MRI in early stages of Alzheimer's disease
Human Brain Mapping
Brain Science
MindScope

Long Xie, Laura E. M. Wisse, John Pluta, Robin de Flores, Virgine Piskin, Jose V. Manjón, Hongzhi Wang, Sandhitsu R. Das, Song-Lin Ding, David A. Wolk, Paul A. Yushkevich, Alzheimer's Disease Neuroimaging Initiative

publication / 2019
TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain
Nature Communications
Brain Science
MindScope

Yimin Wang, Qi Li, Lijuan Liu, Zhi Zhou, Zongcai Ruan, Lingsheng Kong, Yaoyao Li, Yun Wang, Ning Zhong, Renjie Chai, Xiangfeng Luo, Yike Guo, Michael Hawrylycz, Qingming Luo, Zhongze Gu, Wei Xie, Hongkui Zeng, Hanchuan Peng

publication / 2019
DynMat, a network that can learn after learning
Neural Networks: The Official Journal of the International Neural Network Society
Brain Science
MindScope

Jung Hoon Lee

publication / 2019
Multi-immersion open-top light-sheet microscope for high-throughput imaging of cleared tissues
Nature Communications
Brain Science
MindScope

Adam K. Glaser, Nicholas P. Reder, Ye Chen, Chengbo Yin, Linpeng Wei, Soyoung Kang, Lindsey A. Barner, Weisi Xie, Erin F. McCarty, Chenyi Mao, Aaron R. Halpern, Caleb R. Stoltzfus, Jonathan S. Daniels, Michael Y. Gerner, Philip R. Nicovich, Joshua C. Vaughan, Lawrence D. True, Jonathan T. C. Liu

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