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publication / 2019
Kilohertz two-photon brain imaging in awake mice
Nature Methods
Brain Science
MindScope

Tong Zhang, Oscar Hernandez, Radosław Chrapkiewicz, Adam Shai, Mark J. Wagner, Yanping Zhang, Cheng-Hsun Wu, Jin Zhong Li, Masatoshi Inoue, Yiyang Gong, Biafra Ahanonu, Hongkui Zeng, Haruhiko Bito, Mark J. Schnitzer

publication / 2019
Definitions, methods, and applications in interpretable machine learning
Proceedings of the National Academy of Sciences of the United States of America
Brain Science
MindScope

W. James Murdoch, Chandan Singh, Karl Kumbier, Reza Abbasi-Asl, Bin Yu

10.1073/pnas.1900654116
Brain Science
publication / 2019
A perspective on Microscopy Metadata: data provenance and quality control
Cell Science

Maximiliaan Huisman, Mathias Hammer, Alex Rigano, Ulrike Boehm, James J. Chambers, Nathalie Gaudreault, Alison J. North, Jaime A. Pimentel, Damir Sudar, Peter Bajcsy, Claire M. Brown, Alexander D. Corbett, Orestis Faklaris, Judith Lacoste, Alex Laude, Glyn Nelson, Roland Nitschke, David Grunwald, Caterina Strambio-De-Castillia

publication / 2019
Neural precursors of decisions that matter-an ERP study of deliberate and arbitrary choice
eLife
Brain Science
MindScope

Uri Maoz, Gideon Yaffe, Christof Koch, Liad Mudrik

10.7554/elife.39787
Brain Science
publication / 2019
Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior
Cell
Brain Science
MindScope

Dong-Wook Kim, Zizhen Yao, Lucas T. Graybuck, Tae Kyung Kim, Thuc Nghi Nguyen, Kimberly A. Smith, Olivia Fong, Lynn Yi, Noushin Koulena, Nico Pierson, Sheel Shah, Liching Lo, Allan-Hermann Pool, Yuki Oka, Lior Pachter, Long Cai, Bosiljka Tasic, Hongkui Zeng, David J. Anderson

10.1016/j.cell.2019.09.020
AIBS First Author, Brain Science
publication / 2019
Mouse embryo geometry drives formation of robust signaling gradients through receptor localization
Nature Communications
Brain Science
MindScope

Zhechun Zhang, Steven Zwick, Ethan Loew, Joshua S. Grimley, Sharad Ramanathan

publication / 2019
Aberration-free multi-plane imaging of neural activity from the mammalian brain using a fast-switching liquid crystal spatial light modulator
Biomedical Optics Express
Brain Science
MindScope

Rui Liu, Neil Ball, James Brockill, Leonard Kuan, Daniel Millman, Cassandra White, Arielle Leon, Derric Williams, Shig Nishiwaki, Saskia de Vries, Josh Larkin, David Sullivan, Cliff Slaughterbeck, Colin Farrell, Peter Saggau

10.1364/boe.10.005059
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
publication / 2019
Single-trial neural dynamics are dominated by richly varied movements
Nature Neuroscience
Neural Dynamics

Simon Musall, Matthew T. Kaufman, Ashley L. Juavinett, Steven Gluf, Anne K. Churchland

publication / 2019
Automatic navigation system for the mouse brain
The Journal of Comparative Neurology
Brain Science
MindScope

Susan J. Tappan, Brian S. Eastwood, Nathan O'Connor, Quanxin Wang, Lydia Ng, David Feng, Bryan M. Hooks, Charles R. Gerfen, Patrick R. Hof, Christoph Schmitz, Jack R. Glaser

10.1002/cne.24635
Brain Science
publication / 2019
Conserved cell types with divergent features in human versus mouse cortex
Nature
Brain Science
MindScope

Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard G. Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder P. Gwinn, Daniel Hirschstein, C. Dirk Keene, Mohamed Keshk, Andrew L. Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey G. Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya V. Shapovalova, Saroja Somasundaram, Aaron Szafer, Elliot R. Thomsen, Michael Tieu, Gerald Quon, Richard H. Scheuermann, Rafael Yuste, Susan M. Sunkin, Boudewijn Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John W. Phillips, Bosiljka Tasic, Hongkui Zeng, Allan R. Jones, Christof Koch, Ed S. Lein

10.1038/s41586-019-1506-7
AIBS First Author, AIBS Last Author, Brain Science
publication / 2019
New insights into the development of the human cerebral cortex
Journal of Anatomy
Brain Science
MindScope

Zoltán Molnár, Gavin J. Clowry, Nenad Šestan, Ayman Alzu'bi, Trygve Bakken, Robert F. Hevner, Petra S. Hüppi, Ivica Kostović, Pasko Rakic, E. S. Anton, David Edwards, Patricia Garcez, Anna Hoerder-Suabedissen, Arnold Kriegstein

publication / 2019
Whole brain imaging reveals distinct spatial patterns of amyloid beta deposition in three mouse models of Alzheimer's disease
The Journal of Comparative Neurology
Brain Science
MindScope

Jennifer D. Whitesell, Alex R. Buckley, Joseph E. Knox, Leonard Kuan, Nile Graddis, Andrew Pelos, Alice Mukora, Wayne Wakeman, Phillip Bohn, Anh Ho, Karla E. Hirokawa, Julie A. Harris

10.1002/cne.24555
AIBS First Author, AIBS Last Author, Brain Science
publication / 2019
Bright and photostable chemigenetic indicators for extended in vivo voltage imaging
Science (New York, N.Y.)
Brain Science
MindScope

Ahmed S. Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C. Seeman, Jianing Yu, Jihong Zheng, Jonathan B. Grimm, Ronak Patel, Johannes Friedrich, Brett D. Mensh, Liam Paninski, John J. Macklin, Gabe J. Murphy, Kaspar Podgorski, Bei-Jung Lin, Tsai-Wen Chen, Glenn C. Turner, Zhe Liu, Minoru Koyama, Karel Svoboda, Misha B. Ahrens, Luke D. Lavis, Eric R. Schreiter

10.1126/science.aav6416
Brain Science
publication / 2019
Automated segmentation of medial temporal lobe subregions on in vivo T1-weighted MRI in early stages of Alzheimer's disease
Human Brain Mapping
Brain Science
MindScope

Long Xie, Laura E. M. Wisse, John Pluta, Robin de Flores, Virgine Piskin, Jose V. Manjón, Hongzhi Wang, Sandhitsu R. Das, Song-Lin Ding, David A. Wolk, Paul A. Yushkevich, Alzheimer's Disease Neuroimaging Initiative

10.1002/hbm.24607
AIBS Last Author, Brain Science
publication / 2019
TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain
Nature Communications
Brain Science
MindScope

Yimin Wang, Qi Li, Lijuan Liu, Zhi Zhou, Zongcai Ruan, Lingsheng Kong, Yaoyao Li, Yun Wang, Ning Zhong, Renjie Chai, Xiangfeng Luo, Yike Guo, Michael Hawrylycz, Qingming Luo, Zhongze Gu, Wei Xie, Hongkui Zeng, Hanchuan Peng

10.1038/s41467-019-11443-y
Brain Science
publication / 2019
DynMat, a network that can learn after learning
Neural Networks: The Official Journal of the International Neural Network Society
Brain Science
MindScope

Jung Hoon Lee

10.1016/j.neunet.2019.04.005
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
publication / 2019
Multi-immersion open-top light-sheet microscope for high-throughput imaging of cleared tissues
Nature Communications
Brain Science
MindScope

Adam K. Glaser, Nicholas P. Reder, Ye Chen, Chengbo Yin, Linpeng Wei, Soyoung Kang, Lindsey A. Barner, Weisi Xie, Erin F. McCarty, Chenyi Mao, Aaron R. Halpern, Caleb R. Stoltzfus, Jonathan S. Daniels, Michael Y. Gerner, Philip R. Nicovich, Joshua C. Vaughan, Lawrence D. True, Jonathan T. C. Liu

publication / 2019
Classification of electrophysiological and morphological neuron types in the mouse visual cortex
Nature Neuroscience
Brain Science
MindScope

Nathan W. Gouwens, Staci A. Sorensen, Jim Berg, Changkyu Lee, Tim Jarsky, Jonathan Ting, Susan M. Sunkin, David Feng, Costas A. Anastassiou, Eliza Barkan, Kris Bickley, Nicole Blesie, Thomas Braun, Krissy Brouner, Agata Budzillo, Shiella Caldejon, Tamara Casper, Dan Castelli, Peter Chong, Kirsten Crichton, Christine Cuhaciyan, Tanya L. Daigle, Rachel Dalley, Nick Dee, Tsega Desta, Song-Lin Ding, Samuel Dingman, Alyse Doperalski, Nadezhda Dotson, Tom Egdorf, Michael Fisher, Rebecca A. de Frates, Emma Garren, Marissa Garwood, Amanda Gary, Nathalie Gaudreault, Keith Godfrey, Melissa Gorham, Hong Gu, Caroline Habel, Kristen Hadley, James Harrington, Julie A. Harris, Alex Henry, DiJon Hill, Sam Josephsen, Sara Kebede, Lisa Kim, Matthew Kroll, Brian Lee, Tracy Lemon, Katherine E. Link, Xiaoxiao Liu, Brian Long, Rusty Mann, Medea McGraw, Stefan Mihalas, Alice Mukora, Gabe J. Murphy, Lindsay Ng, Kiet Ngo, Thuc Nghi Nguyen, Philip R. Nicovich, Aaron Oldre, Daniel Park, Sheana Parry, Jed Perkins, Lydia Potekhina, David Reid, Miranda Robertson, David Sandman, Martin Schroedter, Cliff Slaughterbeck, Gilberto Soler-Llavina, Josef Sulc, Aaron Szafer, Bosiljka Tasic, Naz Taskin, Corinne Teeter, Nivretta Thatra, Herman Tung, Wayne Wakeman, Grace Williams, Rob Young, Zhi Zhou, Colin Farrell, Hanchuan Peng, Michael J. Hawrylycz, Ed Lein, Lydia Ng, Anton Arkhipov, Amy Bernard, John W. Phillips, Hongkui Zeng, Christof Koch

10.1038/s41593-019-0417-0
AIBS First Author, AIBS Last Author, Brain Science
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