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publication / 2023
Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex
Nature Communications
Brain Science
MindScope

Yina Wei, Anirban Nandi, Xiaoxuan Jia, Joshua H. Siegle, Daniel Denman, Soo Yeun Lee, Anatoly Buchin, Werner Van Geit, Clayton P. Mosher, Shawn Olsen, Costas A. Anastassiou

publication / 2023
Predictive and robust gene selection for spatial transcriptomics
Nature Communications
Brain Science
MindScope

Ian Covert, Rohan Gala, Tim Wang, Karel Svoboda, Uygar Sümbül, Su-In Lee

publication / 2023
A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases
PLoS biology
Brain Science
MindScope

Yashar Zeighami, Trygve E. Bakken, Thomas Nickl-Jockschat, Zeru Peterson, Anil G. Jegga, Jeremy A. Miller, Jay Schulkin, Alan C. Evans, Ed S. Lein, Michael Hawrylycz

publication / 2023
Deep brain imaging on the move
Nature Methods
Brain Science
MindScope

Jérôme A. Lecoq, Roman Boehringer, Benjamin F. Grewe

publication / 2023
Linking connectome with transcriptome using a self-inactivating rabies virus
Nature Methods
Brain Science
MindScope

Shenqin Yao, Boaz P. Levi

publication / 2023
Neocortical and medial temporal seizures have distinct impacts on brain responsiveness
Epilepsia
Brain Science
MindScope

Simone Russo, Ezequiel Mikulan, Flavia Maria Zauli, Ivana Sartori, Michela Solbiati, Giulia Furregoni, Marta Porro, Martina Revay, Mario Rosanova, Olivier David, Marcello Massimini, Laura Tassi, Andrea Pigorini

publication / 2023
Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator
Neuron
Brain Science
MindScope

Ahmed S. Abdelfattah, Jihong Zheng, Amrita Singh, Yi-Chieh Huang, Daniel Reep, Getahun Tsegaye, Arthur Tsang, Benjamin J. Arthur, Monika Rehorova, Carl V. L. Olson, Yichun Shuai, Lixia Zhang, Tian-Ming Fu, Daniel E. Milkie, Maria V. Moya, Timothy D. Weber, Andrew L. Lemire, Christopher A. Baker, Natalie Falco, Qinsi Zheng, Jonathan B. Grimm, Mighten C. Yip, Deepika Walpita, Martin Chase, Luke Campagnola, Gabe J. Murphy, Allan M. Wong, Craig R. Forest, Jerome Mertz, Michael N. Economo, Glenn C. Turner, Minoru Koyama, Bei-Jung Lin, Eric Betzig, Ondrej Novak, Luke D. Lavis, Karel Svoboda, Wyatt Korff, Tsai-Wen Chen, Eric R. Schreiter, Jeremy P. Hasseman, Ilya Kolb

publication / 2023
Reporting reproducible imaging protocols
STAR Protocols
Cell Science

DeLaine D. Larsen, Nathalie Gaudreault, Holly C. Gibbs

publication / 2023
Neural population dynamics of computing with synaptic modulations
eLife
Brain Science
MindScope

Kyle Aitken, Stefan Mihalas

preprint / 2023
Stimulus novelty uncovers coding diversity in visual cortical circuits
Neural Dynamics

Marina Garrett, Peter Groblewski, Alex Piet, Doug Ollerenshaw, Farzaneh Najafi, Iryna Yavorska, Adam Amster, Corbett Bennett, Michael Buice, Shiella Caldejon, Linzy Casal, Florence D’Orazi, Scott Daniel, Saskia EJ de Vries, Daniel Kapner, Justin Kiggins, Jerome Lecoq, Peter Ledochowitsch, Sahar Manavi, Nicholas Mei, Christopher B. Morrison, Sarah Naylor, Natalia Orlova, Jed Perkins, Nick Ponvert, Clark Roll, Sam Seid, Derric Williams, Allison Williford, Ruweida Ahmed, Daniel Amine, Yazan Billeh, Chris Bowman, Nicholas Cain, Andrew Cho, Tim Dawe, Max Departee, Marie Desoto, David Feng, Sam Gale, Emily Gelfand, Nile Gradis, Conor Grasso, Nicole Hancock, Brian Hu, Ross Hytnen, Xiaoxuan Jia, Tye Johnson, India Kato, Sara Kivikas, Leonard Kuan, Quinn L’Heureux, Sophie Lambert, Arielle Leon, Elizabeth Liang, Fuhui Long, Kyla Mace, Ildefons Magrans de Abril, Chris Mochizuki, Chelsea Nayan, Katherine North, Lydia Ng, Gabriel Koch Ocker, Michael Oliver, Paul Rhoads, Kara Ronellenfitch, Kathryn Schelonka, Josh Sevigny, David Sullivan, Ben Sutton, Jackie Swapp, Thuyanh K. Nguyen, Xana Waughman, Joshua Wilkes, Michael Wang, Colin Farrell, Wayne Wakeman, Hongkui Zeng, John Phillips, Stefan Mihalas, Anton Arkhipov, Christof Koch, Shawn R. Olsen

publication / 2023
On the Role of Theory and Modeling in Neuroscience
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Daniel Levenstein, Veronica A. Alvarez, Asohan Amarasingham, Habiba Azab, Zhe S. Chen, Richard C. Gerkin, Andrea Hasenstaub, Ramakrishnan Iyer, Renaud B. Jolivet, Sarah Marzen, Joseph D. Monaco, Astrid A. Prinz, Salma Quraishi, Fidel Santamaria, Sabyasachi Shivkumar, Matthew F. Singh, Roger Traub, Farzan Nadim, Horacio G. Rotstein, A. David Redish

publication / 2023
Heterogeneity in Neuronal Dynamics Is Learned by Gradient Descent for Temporal Processing Tasks
Neural Computation
Brain Science
MindScope

Chloe N. Winston, Dana Mastrovito, Eric Shea-Brown, Stefan Mihalas

publication / 2023
Regional and cell-type-specific afferent and efferent projections of the mouse claustrum
Cell Reports
Brain Science
MindScope

Quanxin Wang, Yun Wang, Hsien-Chi Kuo, Peng Xie, Xiuli Kuang, Karla E. Hirokawa, Maitham Naeemi, Shenqin Yao, Matt Mallory, Ben Ouellette, Phil Lesnar, Yaoyao Li, Min Ye, Chao Chen, Wei Xiong, Leila Ahmadinia, Laila El-Hifnawi, Ali Cetin, Staci A. Sorensen, Julie A. Harris, Hongkui Zeng, Christof Koch

publication / 2023
An adversarial collaboration protocol for testing contrasting predictions of global neuronal workspace and integrated information theory
PLOS ONE
Brain Science
MindScope
Brain and Consciousness

Lucia Melloni, Liad Mudrik, Michael Pitts, Katarina Bendtz, Oscar Ferrante, Urszula Gorska, Rony Hirschhorn, Aya Khalaf, Csaba Kozma, Alex Lepauvre, Ling Liu, David Mazumder, David Richter, Hao Zhou, Hal Blumenfeld, Melanie Boly, David J. Chalmers, Sasha Devore, Francis Fallon, Floris P. de Lange, Ole Jensen, Gabriel Kreiman, Huan Luo, Theofanis I. Panagiotaropoulos, Stanislas Dehaene, Christof Koch, Giulio Tononi

publication / 2023
Targeted anatomical and functional identification of antinociceptive and pronociceptive serotonergic neurons that project to the spinal dorsal horn
eLife
No items found.

Robert Philip Ganley, Marilia Magalhaes de Sousa, Kira Werder, Tugce Öztürk, Raquel Mendes, Matteo Ranucci, Hendrik Wildner, Hanns Ulrich Zeilhofer, David D Ginty

publication / 2023
Acute head-fixed recordings in awake mice with multiple Neuropixels probes
Nature Protocols
Brain Science
MindScope

Séverine Durand, Greggory R. Heller, Tamina K. Ramirez, Jennifer A. Luviano, Allison Williford, David T. Sullivan, Alex J. Cahoon, Colin Farrell, Peter A. Groblewski, Corbett Bennett, Joshua H. Siegle, Shawn R. Olsen

publication / 2023
A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex
Nature Neuroscience
Brain Science
MindScope

Shenqin Yao, Quanxin Wang, Karla E. Hirokawa, Benjamin Ouellette, Ruweida Ahmed, Jasmin Bomben, Krissy Brouner, Linzy Casal, Shiella Caldejon, Andy Cho, Nadezhda I. Dotson, Tanya L. Daigle, Tom Egdorf, Rachel Enstrom, Amanda Gary, Emily Gelfand, Melissa Gorham, Fiona Griffin, Hong Gu, Nicole Hancock, Robert Howard, Leonard Kuan, Sophie Lambert, Eric Kenji Lee, Jennifer Luviano, Kyla Mace, Michelle Maxwell, Marty T. Mortrud, Maitham Naeemi, Chelsea Nayan, Nhan-Kiet Ngo, Thuyanh Nguyen, Kat North, Shea Ransford, Augustin Ruiz, Sam Seid, Jackie Swapp, Michael J. Taormina, Wayne Wakeman, Thomas Zhou, Philip R. Nicovich, Ali Williford, Lydia Potekhina, Medea McGraw, Lydia Ng, Peter A. Groblewski, Bosiljka Tasic, Stefan Mihalas, Julie A. Harris, Ali Cetin, Hongkui Zeng

publication / 2023
Impaired dendritic spike generation in the Fragile X prefrontal cortex is due to loss of dendritic sodium channels
The Journal of Physiology
Brain Science
MindScope

Federico Brandalise, Brian E. Kalmbach, Erik P. Cook, Darrin H. Brager

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