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publication / 2023
Compression strategies for large-scale electrophysiology data
Journal of Neural Engineering
Neural Dynamics

Alessio P. Buccino, Olivier Winter, David Bryant, David Feng, Karel Svoboda, Joshua H. Siegle

publication / 2023
A biologically inspired architecture with switching units can learn to generalize across backgrounds
Neural Networks: The Official Journal of the International Neural Network Society
Brain Science
MindScope

Doris Voina, Eric Shea-Brown, Stefan Mihalas

publication / 2023
Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
Nature Ecology & Evolution
Brain Science
MindScope

Hamsini Suresh, Megan Crow, Nikolas Jorstad, Rebecca Hodge, Ed Lein, Alexander Dobin, Trygve Bakken, Jesse Gillis

publication / 2023
OME-Zarr: a cloud-optimized bioimaging file format with international community support
Histochemistry and Cell Biology
Cell Science

Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Eva M. Brown, Jean-Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E. Diel, David Gault, Satrajit S. Ghosh, Ilan Gold, Yaroslav O. Halchenko, Matthew Hartley, Dave Horsfall, Mark S. Keller, Mark Kittisopikul, Gabor Kovacs, Aybüke Küpcü Yoldaş, Koji Kyoda, Albane le Tournoulx de la Villegeorges, Tong Li, Prisca Liberali, Dominik Lindner, Melissa Linkert, Joel Lüthi, Jeremy Maitin-Shepard, Trevor Manz, Luca Marconato, Matthew McCormick, Merlin Lange, Khaled Mohamed, William Moore, Nils Norlin, Wei Ouyang, Bugra Özdemir, Giovanni Palla, Constantin Pape, Lucas Pelkmans, Tobias Pietzsch, Stephan Preibisch, Martin Prete, Norman Rzepka, Sameeul Samee, Nicholas Schaub, Hythem Sidky, Ahmet Can Solak, David R. Stirling, Jonathan Striebel, Christian Tischer, Daniel Toloudis, Isaac Virshup, Petr Walczysko, Alan M. Watson, Erin Weisbart, Frances Wong, Kevin A. Yamauchi, Omer Bayraktar, Beth A. Cimini, Nils Gehlenborg, Muzlifah Haniffa, Nathan Hotaling, Shuichi Onami, Loic A. Royer, Stephan Saalfeld, Oliver Stegle, Fabian J. Theis, Jason R. Swedlow

publication / 2023
Saccade-Responsive Visual Cortical Neurons Do Not Exhibit Distinct Visual Response Properties
eNeuro
Brain Science
MindScope
Neural Dynamics

Chase W. King, Peter Ledochowitsch, Michael A. Buice, Saskia E. J. de Vries

publication / 2023
All-optical recreation of naturalistic neural activity with a multifunctional transgenic reporter mouse
Cell Reports
Brain Science
MindScope

Hayley A. Bounds, Masato Sadahiro, William D. Hendricks, Marta Gajowa, Karthika Gopakumar, Daniel Quintana, Bosiljka Tasic, Tanya L. Daigle, Hongkui Zeng, Ian Antón Oldenburg, Hillel Adesnik

publication / 2023
Neuroscience Needs Network Science
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Dániel L. Barabási, Ginestra Bianconi, Ed Bullmore, Mark Burgess, SueYeon Chung, Tina Eliassi-Rad, Dileep George, István A. Kovács, Hernán Makse, Thomas E. Nichols, Christos Papadimitriou, Olaf Sporns, Kim Stachenfeld, Zoltán Toroczkai, Emma K. Towlson, Anthony M. Zador, Hongkui Zeng, Albert-László Barabási, Amy Bernard, György Buzsáki

publication / 2023
Ferroptosis of Microglia in Aging Human White Matter Injury
Annals of Neurology
Brain Science
MindScope

Philip A. Adeniyi, Xi Gong, Ellie MacGregor, Kiera Degener-O'Brien, Evelyn McClendon, Mariel Garcia, Oscar Romero, Joshua Russell, Taasin Srivastava, Jeremy Miller, C. Dirk Keene, Stephen A. Back

publication / 2023
Transcriptional maintenance of cortical somatostatin interneuron subtype identity during migration
Neuron
Brain Science
MindScope

Hermany Munguba, Kasra Nikouei, Hannah Hochgerner, Polina Oberst, Alexandra Kouznetsova, Jesper Ryge, Ana Belén Muñoz-Manchado, Jennie Close, Renata Batista-Brito, Sten Linnarsson, Jens Hjerling-Leffler

publication / 2023
Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project
Molecular Cell
Brain Science
MindScope
Cell Science

Job Dekker, Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont, Lacramioara Bintu, Alistair Boettiger, Riccardo Calandrelli, Christine M. Disteche, David M. Gilbert, Thomas Gregor, Anders S. Hansen, Bo Huang, Danwei Huangfu, Reza Kalhor, Christina S. Leslie, Wenbo Li, Yun Li, Jian Ma, William S. Noble, Peter J. Park, Jennifer E. Phillips-Cremins, Katherine S. Pollard, Susanne M. Rafelski, Bing Ren, Yijun Ruan, Yaron Shav-Tal, Yin Shen, Jay Shendure, Xiaokun Shu, Caterina Strambio-De-Castillia, Anastassiia Vertii, Huaiying Zhang, Sheng Zhong

publication / 2023
Emerging roles of oligodendrocyte precursor cells in neural circuit development and remodeling
Trends in Neurosciences
Brain Science
MindScope

JoAnn Buchanan, Nuno Maçarico da Costa, Lucas Cheadle

publication / 2023
Uncovering circuit mechanisms of current sinks and sources with biophysical simulations of primary visual cortex
eLife
Brain Science
MindScope
Brain and Consciousness

Atle E. Rimehaug, Alexander J. Stasik, Espen Hagen, Yazan N. Billeh, Josh H. Siegle, Kael Dai, Shawn R. Olsen, Christof Koch, Gaute T. Einevoll, Anton Arkhipov

publication / 2023
Genes associated with cognitive ability and HAR show overlapping expression patterns in human cortical neuron types
Nature Communications
Brain Science
MindScope

Stan L. W. Driessens, Anna A. Galakhova, Djai B. Heyer, Isabel J. Pieterse, René Wilbers, Eline J. Mertens, Femke Waleboer, Tim S. Heistek, Loet Coenen, Julia R. Meijer, Sander Idema, Philip C. de Witt Hamer, David P. Noske, Christiaan P. J. de Kock, Brian R. Lee, Kimberly Smith, Jonathan T. Ting, Ed S. Lein, Huibert D. Mansvelder, Natalia A. Goriounova

publication / 2023
Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes
Cell Genomics
Brain Science
MindScope

Fangming Xie, Ethan J. Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M. Margarita Behrens, Yang Eric Li, Jacinta D. Lucero, Chongyuan Luo, Joseph R. Nery, Antonio Pinto-Duarte, Olivier B. Poirion, Sebastian Preissl, Angeline C. Rivkin, Bosiljka Tasic, Hongkui Zeng, Bing Ren, Joseph R. Ecker, Eran A. Mukamel

publication / 2023
Sharing neurophysiology data from the Allen Brain Observatory
eLife
Brain Science
MindScope
Brain and Consciousness

Saskia E. J. de Vries, Joshua H. Siegle, Christof Koch

publication / 2023
Teaching and Training with Open Science: From Classroom Teaching Tool to Professional Development
Neuroscience
Brain Science
Education and Engagement

Kaitlyn Casimo

publication / 2023
Adeno-associated viral vectors for functional intravenous gene transfer throughout the non-human primate brain
Nature Nanotechnology
Brain Science
MindScope

Miguel R. Chuapoco, Nicholas C. Flytzanis, Nick Goeden, J. Christopher Octeau, Kristina M. Roxas, Ken Y. Chan, Jon Scherrer, Janet Winchester, Roy J. Blackburn, Lillian J. Campos, Kwun Nok Mimi Man, Junqing Sun, Xinhong Chen, Arthur Lefevre, Vikram Pal Singh, Cynthia M. Arokiaraj, Timothy F. Shay, Julia Vendemiatti, Min J. Jang, John K. Mich, Yemeserach Bishaw, Bryan B. Gore, Victoria Omstead, Naz Taskin, Natalie Weed, Boaz P. Levi, Jonathan T. Ting, Cory T. Miller, Benjamin E. Deverman, James Pickel, Lin Tian, Andrew S. Fox, Viviana Gradinaru

publication / 2023
When seeing is not believing: application-appropriate validation matters for quantitative bioimage analysis
Nature Methods
Cell Science

Jianxu Chen, Matheus P. Viana, Susanne M. Rafelski

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