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synthetic biology
engineering cells and organisms to record their own histories, giving science an unprecedented look into how life unfolds.
synthetic biology team
Scientist in purple gloves pipetting sample in modern laboratory with city view

Cells don't just exist in the present. We’re learning how to record and reconstruct everything they experience as they develop into organisms.

Traditional biology works in snapshots, capturing a frozen moment in a cell or organism's life. But disease doesn't emerge in a single moment. It's a process, unfolding over time through countless molecular and cellular decisions. To truly understand disease, you need to understand that entire process. 

The Seattle Hub for Synthetic Biology—a landmark collaboration between the Allen Institute, Biohub, and the University of Washington—is engineering cells to record their histories as they divide, differentiate, and mature. Scientists can capture a complete chronicle of millions of cells at once, in whole organisms, creating datasets that will power AI models and open entirely new doors in disease research.

Scientist in white lab coat using purple pipette in bright laboratory setting with equipment
By engineering cells to write their own histories into their DNA, we're aiming to build the most detailed picture to date of how biology changes over a lifetime.

teams at dexter yard

sense team
We develop sensors that convert cellular events into barcodes that can then be written into DNA.
write team
We take the barcodes from the Sense Team and create a permanent record (DNA Tape) in the cellular DNA.
read team
We develop computational pipelines and methods to advance the field of in vivo genomic recording.
in vivo team
We create mammalian models that incorporate DNA Typewriter technology for whole organism recording.
operations team
From planning to execution, we support the SeaHub Accelerator and the teams that drive it.

teams at the University of Washington/

Shendure Lab‍
This team is working to develop and apply new technologies and methods for genetics, genomics and molecular biology. Research by the Shendure Lab focuses on next-generation DNA sequencing to measure biological phenomena.

Trapnell Lab
The Trapnell Lab at the University of Washington’s Department of Genome Sciences studies how genomes encode the program of vertebrate development and how that program goes awry in disease.

Pepper Lab
Investigating antigen specific adaptive immune cells to better design vaccines and therapeutics.

Pinglay Lab
We are a laboratory of biological tinkerers at the intersection of DNA synthesis, protein design and single-cell sequencing.

Hamazaki Lab
We use and develop a stem-cell based embryo model that allow us to test out the synthesized DNA circuit in physiologically relevant context and to understand human developmental diseases.

Brotman Baty Institute
The Brotman Baty Institute operationalizes and administers the University of Washington (UW) portion of the SeaHub project, and provides single-cell sequencing support to SeaHub teams in the Shendure, Trapnell, Pepper, Pinglay and Hamazaki labs at UW.

SeaBridge
SeaBridge is a program to translate the Seattle Hub for Synthetic Biology’s cutting-edge technologies into real-world applications. We integrate a postdoctoral fellowship training program (SeaBridge Fellowship Program) with a translational research center (LaunchPad) to train the next generation of scientists while advancing the potential of Seattle Hub for Synthetic Biology’s unique genome engineering platform.

Riza Daza (Operations and Platform Scientist) creating a 96 well primer plate for NGS sample preparation using the Liquidator 96.

leadership team

Jay Shendure
scientific director, UW Medicine Brotman Baty Institute for Precision Medicine; scientific director, Seattle Hub for Synthetic Biology; Howard Hughes Medical Institute investigator
Cole Trapnell
Scientific Co-Director, Seattle Hub for Synthetic Biology; Associate Professor of Genome Sciences, University of Washington
Marion Pepper
Scientific Co-Director, Seattle Hub for Synthetic Biology; Professor & Chair of Immunology, University of Washington
Jesse Gray
Executive Director, SeaHub Strategy & Platform
Carrie Brockway
Executive Director, SeaBridge
Nola Klemfuss
Administrative Director at Brotman Baty Institute
Inna Dashevsky
Director of Scientific Operations

synthetic biology advisory council

Stein Aerts
University of Leuven
Jef Boeke
NYU Langone Health
Eileen Furlong
EMBL
Dan Littman
NYU School of Medicine and HHMI
Alex Schier
University of Basel
Olga Troyanskaya
Princeton
Two scientists in white coats and purple gloves work at separate lab benches in a modern facility.

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synthetic biology news

news
BioCentury Grand Rounds conference highlights importance of big data
The conference hosted Nobel Laureates, researchers, and biotech leaders in Seattle looking to advance better treatments in medicine
news
Seattle Hub for Synthetic Biology launched by Allen Institute, Chan Zuckerberg Initiative, and the University of Washington will turn cells into recording devices to unlock secrets of disease
First-of-its-kind research initiative will develop technologies to reveal how changes in cells and genes over time influence human health and...
science images
SciShots: a cell’s fate
Synthetic biology is helping scientists understand development
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podcasts

Lab Notes | Bridging science fiction and reality: Seattle Hub for Synthetic Biology

Global science lies at the edge of a new age of discovery thanks to advances in synthetic biology driving innovations that could reshape human health.
read more
2025-10-20
Imagine being able to put a smart watch into each of your cells to record everything that each cell is experiencing to the genome itself.
Jay Shendure
scientific director, UW Medicine Brotman Baty Institute for Precision Medicine; scientific director, Seattle Hub for Synthetic Biology; Howard Hughes Medical Institute investigator
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synthetic biology events

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synthetic biology publications

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publication / 2025
Multiplex generation and single-cell analysis of structural variants in mammalian genomes
Science
publication / 2024
Revealing gene function with statistical inference at single-cell resolution
Nature Reviews. Genetics
publication / 2024
Symbolic recording of signalling and cis-regulatory element activity to DNA
Nature
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