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publication / 2014
Local spectral anisotropy is a valid cue for figure-ground organization in natural scenes
Vision Research
Brain Science
MindScope

Sudarshan Ramenahalli, Stefan Mihalas, Ernst Niebur

publication / 2014
Phenotypic characterization of recessive gene knockout rat models of Parkinson's disease
Neurobiology of Disease
Brain Science
MindScope

Kuldip D. Dave, Shehan De Silva, Niketa P. Sheth, Sylvie Ramboz, Melissa J. Beck, Changyu Quang, Robert C. Switzer, Syed O. Ahmad, Susan M. Sunkin, Dan Walker, Xiaoxia Cui, Daniel A. Fisher, Aaron M. McCoy, Kevin Gamber, Xiaodong Ding, Matthew S. Goldberg, Stanley A. Benkovic, Meredith Haupt, Marco A. S. Baptista, Brian K. Fiske, Todd B. Sherer, Mark A. Frasier

publication / 2014
Information integration without awareness
Trends in Cognitive Sciences
Brain Science
MindScope

Liad Mudrik, Nathan Faivre, Christof Koch

publication / 2014
Disruptive CHD8 mutations define a subtype of autism early in development
Cell
Brain Science
MindScope

Raphael Bernier, Christelle Golzio, Bo Xiong, Holly A. Stessman, Bradley P. Coe, Osnat Penn, Kali Witherspoon, Jennifer Gerdts, Carl Baker, Anneke T. Vulto-van Silfhout, Janneke H. Schuurs-Hoeijmakers, Marco Fichera, Paolo Bosco, Serafino Buono, Antonino Alberti, Pinella Failla, Hilde Peeters, Jean Steyaert, Lisenka E. L. M. Vissers, Ludmila Francescatto, Heather C. Mefford, Jill A. Rosenfeld, Trygve Bakken, Brian J. O'Roak, Matthew Pawlus, Randall Moon, Jay Shendure, David G. Amaral, Ed Lein, Julia Rankin, Corrado Romano, Bert B. A. de Vries, Nicholas Katsanis, Evan E. Eichler

publication / 2014
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain
Neuron
Brain Science
MindScope

Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L. R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Michael J. Hawrylycz, Luis Puelles, Allan R. Jones

publication / 2014
Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis
Nature Communications
Brain Science
MindScope

Hanchuan Peng, Jianyong Tang, Hang Xiao, Alessandro Bria, Jianlong Zhou, Victoria Butler, Zhi Zhou, Paloma T. Gonzalez-Bellido, Seung W. Oh, Jichao Chen, Ananya Mitra, Richard W. Tsien, Hongkui Zeng, Giorgio A. Ascoli, Giulio Iannello, Michael Hawrylycz, Eugene Myers, Fuhui Long

publication / 2014
CORTECON: a temporal transcriptome analysis of in vitro human cerebral cortex development from human embryonic stem cells
Neuron
Brain Science
MindScope

Joyce van de Leemput, Nathan C. Boles, Thomas R. Kiehl, Barbara Corneo, Patty Lederman, Vilas Menon, Changkyu Lee, Refugio A. Martinez, Boaz P. Levi, Carol L. Thompson, Shuyuan Yao, Ajamete Kaykas, Sally Temple, Christopher A. Fasano

publication / 2014
Systematic comparison of adeno-associated virus and biotinylated dextran amine reveals equivalent sensitivity between tracers and novel projection targets in the mouse brain
The Journal of Comparative Neurology
Brain Science
MindScope

Quanxin Wang, Alex M. Henry, Julie A. Harris, Seung Wook Oh, Kevin M. Joines, Julie Nyhus, Karla E. Hirokawa, Nick Dee, Marty Mortrud, Sheana Parry, Benjamin Ouellette, Shiella Caldejon, Amy Bernard, Allan R. Jones, Hongkui Zeng, John G. Hohmann

publication / 2014
Transcriptional regulation of enhancers active in protodomains of the developing cerebral cortex
Neuron
Brain Science
MindScope

Kartik Pattabiraman, Olga Golonzhka, Susan Lindtner, Alex S. Nord, Leila Taher, Renee Hoch, Shanni N. Silberberg, Dongji Zhang, Bin Chen, HongKui Zeng, Len A. Pennacchio, Luis Puelles, Axel Visel, John L. R. Rubenstein

publication / 2014
Temporal structure coding with and without awareness
Cognition
Brain Science
MindScope

N. Faivre, C. Koch

publication / 2014
Scalable control of mounting and attack by Esr1+ neurons in the ventromedial hypothalamus
Nature
Brain Science
MindScope

Hyosang Lee, Dong-Wook Kim, Ryan Remedios, Todd E. Anthony, Angela Chang, Linda Madisen, Hongkui Zeng, David J. Anderson

publication / 2014
A mesoscale connectome of the mouse brain
Nature
Brain Science
MindScope

Seung Wook Oh, Julie A. Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M. Henry, Marty T. Mortrud, Benjamin Ouellette, Thuc Nghi Nguyen, Staci A. Sorensen, Clifford R. Slaughterbeck, Wayne Wakeman, Yang Li, David Feng, Anh Ho, Eric Nicholas, Karla E. Hirokawa, Phillip Bohn, Kevin M. Joines, Hanchuan Peng, Michael J. Hawrylycz, John W. Phillips, John G. Hohmann, Paul Wohnoutka, Charles R. Gerfen, Christof Koch, Amy Bernard, Chinh Dang, Allan R. Jones, Hongkui Zeng

publication / 2014
Transcriptional landscape of the prenatal human brain
Nature
Brain Science
MindScope

Jeremy A. Miller, Song-Lin Ding, Susan M. Sunkin, Kimberly A. Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L. Riley, Joshua J. Royall, Kaylynn Aiona, James M. Arnold, Crissa Bennet, Darren Bertagnolli, Krissy Brouner, Stephanie Butler, Shiella Caldejon, Anita Carey, Christine Cuhaciyan, Rachel A. Dalley, Nick Dee, Tim A. Dolbeare, Benjamin A. C. Facer, David Feng, Tim P. Fliss, Garrett Gee, Jeff Goldy, Lindsey Gourley, Benjamin W. Gregor, Guangyu Gu, Robert E. Howard, Jayson M. Jochim, Chihchau L. Kuan, Christopher Lau, Chang-Kyu Lee, Felix Lee, Tracy A. Lemon, Phil Lesnar, Bergen McMurray, Naveed Mastan, Nerick Mosqueda, Theresa Naluai-Cecchini, Nhan-Kiet Ngo, Julie Nyhus, Aaron Oldre, Eric Olson, Jody Parente, Patrick D. Parker, Sheana E. Parry, Allison Stevens, Mihovil Pletikos, Melissa Reding, Kate Roll, David Sandman, Melaine Sarreal, Sheila Shapouri, Nadiya V. Shapovalova, Elaine H. Shen, Nathan Sjoquist, Clifford R. Slaughterbeck, Michael Smith, Andy J. Sodt, Derric Williams, Lilla Zöllei, Bruce Fischl, Mark B. Gerstein, Daniel H. Geschwind, Ian A. Glass, Michael J. Hawrylycz, Robert F. Hevner, Hao Huang, Allan R. Jones, James A. Knowles, Pat Levitt, John W. Phillips, Nenad Sestan, Paul Wohnoutka, Chinh Dang, Amy Bernard, John G. Hohmann, Ed S. Lein

publication / 2014
Cell-type-based model explaining coexpression patterns of genes in the brain
Proceedings of the National Academy of Sciences of the United States of America
Brain Science
MindScope

Pascal Grange, Jason W. Bohland, Benjamin W. Okaty, Ken Sugino, Hemant Bokil, Sacha B. Nelson, Lydia Ng, Michael Hawrylycz, Partha P. Mitra

publication / 2014
Altered gene expression in the dorsolateral prefrontal cortex of individuals with schizophrenia
Molecular Psychiatry
Brain Science
MindScope

A. L. Guillozet-Bongaarts, T. M. Hyde, R. A. Dalley, M. J. Hawrylycz, A. Henry, P. R. Hof, J. Hohmann, A. R. Jones, C. L. Kuan, J. Royall, E. Shen, B. Swanson, H. Zeng, J. E. Kleinman

publication / 2014
Patches of disorganization in the neocortex of children with autism
The New England Journal of Medicine
Brain Science
MindScope

Rich Stoner, Maggie L. Chow, Maureen P. Boyle, Susan M. Sunkin, Peter R. Mouton, Subhojit Roy, Anthony Wynshaw-Boris, Sophia A. Colamarino, Ed S. Lein, Eric Courchesne

publication / 2014
Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq
BMC genomics
Brain Science
MindScope

Jeremy A. Miller, Vilas Menon, Jeff Goldy, Ajamete Kaykas, Chang-Kyu Lee, Kimberly A. Smith, Elaine H. Shen, John W. Phillips, Ed S. Lein, Mike J. Hawrylycz

publication / 2014
A mouse model of higher visual cortical function
Current Opinion in Neurobiology
Brain Science
MindScope

Lindsey L. Glickfeld, R. Clay Reid, Mark L. Andermann

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