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publication / 2020
A collection of genetic mouse lines and related tools for inducible and reversible intersectional mis-expression
Development (Cambridge, England)
Brain Science
MindScope

Elham Ahmadzadeh, N. Sumru Bayin, Xinli Qu, Aditi Singh, Linda Madisen, Daniel Stephen, Hongkui Zeng, Alexandra L. Joyner, Alberto Rosello-Diez

10.1242/dev.186650
Brain Science
publication / 2020
Whole-Neuron Synaptic Mapping Reveals Spatially Precise Excitatory/Inhibitory Balance Limiting Dendritic and Somatic Spiking
Neuron
Brain Science
MindScope

Daniel Maxim Iascone, Yujie Li, Uygar Sümbül, Michael Doron, Hanbo Chen, Valentine Andreu, Finola Goudy, Heike Blockus, Larry F. Abbott, Idan Segev, Hanchuan Peng, Franck Polleux

10.1016/j.neuron.2020.02.015
Brain Science
publication / 2020
Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
Cell Reports
Brain Science
MindScope

Song-Lin Ding, Zizhen Yao, Karla E. Hirokawa, Thuc Nghi Nguyen, Lucas T. Graybuck, Olivia Fong, Phillip Bohn, Kiet Ngo, Kimberly A. Smith, Christof Koch, John W. Phillips, Ed S. Lein, Julie A. Harris, Bosiljka Tasic, Hongkui Zeng

10.1016/j.celrep.2020.107648
AIBS First Author, AIBS Last Author, Brain Science
publication / 2020
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
Cell
Brain Science
MindScope

Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho, Tim Dolbeare, Brandon Blanchard, Nick Dee, Wayne Wakeman, Karla E. Hirokawa, Aaron Szafer, Susan M. Sunkin, Seung Wook Oh, Amy Bernard, John W. Phillips, Michael Hawrylycz, Christof Koch, Hongkui Zeng, Julie A. Harris, Lydia Ng

10.1016/j.cell.2020.04.007
AIBS First Author, AIBS Last Author, Brain Science
publication / 2020
Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex
Neuron
Brain Science
MindScope

Yazan N. Billeh, Binghuang Cai, Sergey L. Gratiy, Kael Dai, Ramakrishnan Iyer, Nathan W. Gouwens, Reza Abbasi-Asl, Xiaoxuan Jia, Joshua H. Siegle, Shawn R. Olsen, Christof Koch, Stefan Mihalas, Anton Arkhipov

10.1016/j.neuron.2020.01.040
Brain Science
publication / 2020
Neural Circuit Dynamics for Sensory Detection
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Sruti Mallik, Srinath Nizampatnam, Anirban Nandi, Debajit Saha, Baranidharan Raman, ShiNung Ching

publication / 2020
Bidirectional short-term plasticity during single-trial learning of cerebellar-driven eyelid movements in mice
Neurobiology of Learning and Memory
Brain Science
MindScope

Farzaneh Najafi, Javier F. Medina

publication / 2020
Capillary-Based and Stokes-Based Trapping of Serial Sections for Scalable 3D-EM Connectomics
eNeuro
Brain Science
MindScope

Timothy J. Lee, Mighten C. Yip, Aditi Kumar, Colby F. Lewallen, Daniel J. Bumbarger, R. Clay Reid, Craig R. Forest

10.1523/eneuro.0328-19.2019
AIBS First Author, AIBS Last Author, Brain Science
publication / 2020
Fundamental bounds on the fidelity of sensory cortical coding
Nature
Brain Science
MindScope

Oleg I. Rumyantsev, Jérôme A. Lecoq, Oscar Hernandez, Yanping Zhang, Joan Savall, Radosław Chrapkiewicz, Jane Li, Hongkui Zeng, Surya Ganguli, Mark J. Schnitzer

10.1038/s41586-020-2130-2
Brain Science
publication / 2020
RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations
Nature Methods
Brain Science
MindScope

Shenqin Yao, Peng Yuan, Ben Ouellette, Thomas Zhou, Marty Mortrud, Pooja Balaram, Soumya Chatterjee, Yun Wang, Tanya L. Daigle, Bosiljka Tasic, Xiuli Kuang, Hui Gong, Qingming Luo, Shaoqun Zeng, Andrew Curtright, Ajay Dhaka, Anat Kahan, Viviana Gradinaru, Radosław Chrapkiewicz, Mark Schnitzer, Hongkui Zeng, Ali Cetin

10.1038/s41592-020-0774-3
AIBS First Author, AIBS Last Author, Brain Science
publication / 2020
Ultraprecise single-molecule localization microscopy enables in situ distance measurements in intact cells
Science Advances
Brain Science
MindScope

Simao Coelho, Jongho Baek, Matthew S. Graus, James M. Halstead, Philip R. Nicovich, Kristen Feher, Hetvi Gandhi, J. Justin Gooding, Katharina Gaus

publication / 2020
Cellular Classes in the Human Brain Revealed In Vivo by Heartbeat-Related Modulation of the Extracellular Action Potential Waveform
Cell Reports
Brain Science
MindScope

Clayton P. Mosher, Yina Wei, Jan Kamiński, Anirban Nandi, Adam N. Mamelak, Costas A. Anastassiou, Ueli Rutishauser

10.1016/j.celrep.2020.02.027
Brain Science
publication / 2020
Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
Nature Communications
Brain Science
MindScope

Rebecca D. Hodge, Jeremy A. Miller, Mark Novotny, Brian E. Kalmbach, Jonathan T. Ting, Trygve E. Bakken, Brian D. Aevermann, Eliza R. Barkan, Madeline L. Berkowitz-Cerasano, Charles Cobbs, Francisco Diez-Fuertes, Song-Lin Ding, Jamison McCorrison, Nicholas J. Schork, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Anna Marie Yanny, Frank J. Steemers, John W. Phillips, Amy Bernard, Christof Koch, Roger S. Lasken, Richard H. Scheuermann, Ed S. Lein

10.1038/s41467-020-14952-3
AIBS First Author, AIBS Last Author, Brain Science
publication / 2020
Experience shapes activity dynamics and stimulus coding of VIP inhibitory cells
eLife
Brain Science
MindScope

Marina Garrett, Sahar Manavi, Kate Roll, Douglas R. Ollerenshaw, Peter A. Groblewski, Nicholas D. Ponvert, Justin T. Kiggins, Linzy Casal, Kyla Mace, Ali Williford, Arielle Leon, Xiaoxuan Jia, Peter Ledochowitsch, Michael A. Buice, Wayne Wakeman, Stefan Mihalas, Shawn R. Olsen

10.7554/elife.50340
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
publication / 2020
Localization of area prostriata and its connections with primary visual cortex in rodent
The Journal of Comparative Neurology
Brain Science
MindScope

Weiye Lu, Shengqiang Chen, Xiexian Chen, Jinmeng Hu, Aiguo Xuan, Song-Lin Ding

10.1002/cne.24760
AIBS Last Author, Brain Science
publication / 2020
Superficial Bound of the Depth Limit of Two-Photon Imaging in Mouse Brain
eNeuro
Brain Science
MindScope

Kevin Takasaki, Reza Abbasi-Asl, Jack Waters

10.1523/eneuro.0255-19.2019
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
publication / 2020
Temporally restricted dopaminergic control of reward-conditioned movements
Nature Neuroscience
Brain Science
MindScope

Kwang Lee, Leslie D. Claar, Ayaka Hachisuka, Konstantin I. Bakhurin, Jacquelyn Nguyen, Jeremy M. Trott, Jay L. Gill, Sotiris C. Masmanidis

publication / 2020
The SONATA data format for efficient description of large-scale network models
PLoS computational biology
Brain Science
MindScope

Kael Dai, Juan Hernando, Yazan N. Billeh, Sergey L. Gratiy, Judit Planas, Andrew P. Davison, Salvador Dura-Bernal, Padraig Gleeson, Adrien Devresse, Benjamin K. Dichter, Michael Gevaert, James G. King, Werner A. H. Van Geit, Arseny V. Povolotsky, Eilif Muller, Jean-Denis Courcol, Anton Arkhipov

10.1371/journal.pcbi.1007696
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
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