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publication / 2018
Distinct descending motor cortex pathways and their roles in movement
Nature
Brain Science
MindScope

Michael N. Economo, Sarada Viswanathan, Bosiljka Tasic, Erhan Bas, Johan Winnubst, Vilas Menon, Lucas T. Graybuck, Thuc Nghi Nguyen, Kimberly A. Smith, Zizhen Yao, Lihua Wang, Charles R. Gerfen, Jayaram Chandrashekar, Hongkui Zeng, Loren L. Looger, Karel Svoboda

publication / 2018
Label-free prediction of three-dimensional fluorescence images from transmitted-light microscopy
Nature Methods
Cell Science

Chawin Ounkomol, Sharmishtaa Seshamani, Mary M. Maleckar, Forrest Collman, Gregory R. Johnson

publication / 2018
Shared and distinct transcriptomic cell types across neocortical areas
Nature
Brain Science
MindScope

Bosiljka Tasic, Zizhen Yao, Lucas T. Graybuck, Kimberly A. Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N. Economo, Sarada Viswanathan, Osnat Penn, Trygve Bakken, Vilas Menon, Jeremy Miller, Olivia Fong, Karla E. Hirokawa, Kanan Lathia, Christine Rimorin, Michael Tieu, Rachael Larsen, Tamara Casper, Eliza Barkan, Matthew Kroll, Sheana Parry, Nadiya V. Shapovalova, Daniel Hirschstein, Julie Pendergraft, Heather A. Sullivan, Tae Kyung Kim, Aaron Szafer, Nick Dee, Peter Groblewski, Ian Wickersham, Ali Cetin, Julie A. Harris, Boaz P. Levi, Susan M. Sunkin, Linda Madisen, Tanya L. Daigle, Loren Looger, Amy Bernard, John Phillips, Ed Lein, Michael Hawrylycz, Karel Svoboda, Allan R. Jones, Christof Koch, Hongkui Zeng

publication / 2018
Visual physiology of the layer 4 cortical circuit in silico
PLoS computational biology
Brain Science
MindScope

Anton Arkhipov, Nathan W. Gouwens, Yazan N. Billeh, Sergey Gratiy, Ramakrishnan Iyer, Ziqiang Wei, Zihao Xu, Reza Abbasi-Asl, Jim Berg, Michael Buice, Nicholas Cain, Nuno da Costa, Saskia de Vries, Daniel Denman, Severine Durand, David Feng, Tim Jarsky, Jérôme Lecoq, Brian Lee, Lu Li, Stefan Mihalas, Gabriel K. Ocker, Shawn R. Olsen, R. Clay Reid, Gilberto Soler-Llavina, Staci A. Sorensen, Quanxin Wang, Jack Waters, Massimo Scanziani, Christof Koch

publication / 2018
A rapid readout for many single plasmonic nanoparticles using dark-field microscopy and digital color analysis
Biosensors & Bioelectronics
Brain Science
MindScope

Manish Sriram, Bijan P. Markhali, Philip R. Nicovich, Danielle T. Bennett, Peter J. Reece, D. Brynn Hibbert, Richard D. Tilley, Katharina Gaus, S. R. C. Vivekchand, J. Justin Gooding

publication / 2018
Distinctive Structural and Molecular Features of Myelinated Inhibitory Axons in Human Neocortex
eNeuro
Brain Science
MindScope

Kristina D. Micheva, Edward F. Chang, Alissa L. Nana, William W. Seeley, Jonathan T. Ting, Charles Cobbs, Ed Lein, Stephen J. Smith, Richard J. Weinberg, Daniel V. Madison

publication / 2018
Predicting how and when hidden neurons skew measured synaptic interactions
PLoS computational biology
Brain Science
MindScope

Braden A. W. Brinkman, Fred Rieke, Eric Shea-Brown, Michael A. Buice

publication / 2018
Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex
eLife
Brain Science
MindScope

Stephanie C. Seeman, Luke Campagnola, Pasha A. Davoudian, Alex Hoggarth, Travis A. Hage, Alice Bosma-Moody, Christopher A. Baker, Jung Hoon Lee, Stefan Mihalas, Corinne Teeter, Andrew L. Ko, Jeffrey G. Ojemann, Ryder P. Gwinn, Daniel L. Silbergeld, Charles Cobbs, John Phillips, Ed Lein, Gabe Murphy, Christof Koch, Hongkui Zeng, Tim Jarsky

publication / 2018
Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes
Scientific Reports
Brain Science
MindScope

Ali Shahbazi, Jeffery Kinnison, Rafael Vescovi, Ming Du, Robert Hill, Maximilian Joesch, Marc Takeno, Hongkui Zeng, Nuno Maçarico da Costa, Jaime Grutzendler, Narayanan Kasthuri, Walter J. Scheirer

publication / 2018
Q&A: Array tomography
BMC biology
Brain Science
MindScope

Stephen J. Smith

publication / 2018
Q&A: Array tomography
BMC biology
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Stephen J. Smith

publication / 2018
Pretangle pathology within cholinergic nucleus basalis neurons coincides with neurotrophic and neurotransmitter receptor gene dysregulation during the progression of Alzheimer's disease
Neurobiology of Disease
Brain Science
MindScope

Chelsea T. Tiernan, Stephen D. Ginsberg, Bin He, Sarah M. Ward, Angela L. Guillozet-Bongaarts, Nicholas M. Kanaan, Elliott J. Mufson, Scott E. Counts

publication / 2018
Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type
Nature Neuroscience
Brain Science
MindScope

Eszter Boldog, Trygve E. Bakken, Rebecca D. Hodge, Mark Novotny, Brian D. Aevermann, Judith Baka, Sándor Bordé, Jennie L. Close, Francisco Diez-Fuertes, Song-Lin Ding, Nóra Faragó, Ágnes K. Kocsis, Balázs Kovács, Zoe Maltzer, Jamison M. McCorrison, Jeremy A. Miller, Gábor Molnár, Gáspár Oláh, Attila Ozsvár, Márton Rózsa, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Abby Wall, László G. Puskás, Pál Barzó, Frank J. Steemers, Nicholas J. Schork, Richard H. Scheuermann, Roger S. Lasken, Ed S. Lein, Gábor Tamás

publication / 2018
Endogenous Protein Tagging in Human Induced Pluripotent Stem Cells Using CRISPR/Cas9
JoVE (Journal of Visualized Experiments)
Cell Science

Amanda Haupt, Tanya Grancharova, Joy Arakaki, Margaret A. Fuqua, Brock Roberts, Ruwanthi N. Gunawardane

publication / 2018
Enteroendocrine cells switch hormone expression along the crypt-to-villus BMP signalling gradient
Nature Cell Biology
Brain Science
MindScope

Joep Beumer, Benedetta Artegiani, Yorick Post, Frank Reimann, Fiona Gribble, Thuc Nghi Nguyen, Hongkui Zeng, Maaike Van den Born, Johan H. Van Es, Hans Clevers

publication / 2018
Towards resolving the presynaptic NMDA receptor debate
Current Opinion in Neurobiology
Brain Science
MindScope

Guy Bouvier, Rylan S. Larsen, Antonio Rodríguez-Moreno, Ole Paulsen, P. Jesper Sjöström

publication / 2018
A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality
Cell
Brain Science
MindScope

Tanya L. Daigle, Linda Madisen, Travis A. Hage, Matthew T. Valley, Ulf Knoblich, Rylan S. Larsen, Marc M. Takeno, Lawrence Huang, Hong Gu, Rachael Larsen, Maya Mills, Alice Bosma-Moody, La' Akea Siverts, Miranda Walker, Lucas T. Graybuck, Zizhen Yao, Olivia Fong, Thuc Nghi Nguyen, Emma Garren, Garreck H. Lenz, Mariya Chavarha, Julie Pendergraft, James Harrington, Karla E. Hirokawa, Julie A. Harris, Philip R. Nicovich, Medea J. McGraw, Douglas R. Ollerenshaw, Kimberly A. Smith, Christopher A. Baker, Jonathan T. Ting, Susan M. Sunkin, Jérôme Lecoq, Michael Z. Lin, Edward S. Boyden, Gabe J. Murphy, Nuno M. da Costa, Jack Waters, Lu Li, Bosiljka Tasic, Hongkui Zeng

publication / 2018
CellProfiler 3.0: Next-generation image processing for biology
PLOS Biology
Cell Science

Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs, Minh Doan, Liya Ding, Susanne M. Rafelski, Derek Thirstrup, Winfried Wiegraebe, Shantanu Singh, Tim Becker, Juan C. Caicedo, Anne E. Carpenter

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