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publication / 2019
Training and Spontaneous Reinforcement of Neuronal Assemblies by Spike Timing Plasticity
Cerebral Cortex (New York, N.Y.: 1991)
Brain Science
MindScope

Gabriel Koch Ocker, Brent Doiron

publication / 2019
Intermittent Hypoxia Disrupts Adult Neurogenesis and Synaptic Plasticity in the Dentate Gyrus
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Maggie A. Khuu, Chelsea M. Pagan, Thara Nallamothu, Robert F. Hevner, Rebecca D. Hodge, Jan-Marino Ramirez, Alfredo J. Garcia

publication / 2019
Adeno-Associated Virus Technologies and Methods for Targeted Neuronal Manipulation
Frontiers in Neuroanatomy
Brain Science
MindScope

Leila Haery, Benjamin E. Deverman, Katherine S. Matho, Ali Cetin, Kenton Woodard, Connie Cepko, Karen I. Guerin, Meghan A. Rego, Ina Ersing, Susanna M. Bachle, Joanne Kamens, Melina Fan

publication / 2019
A Microglial Signature Directing Human Aging and Neurodegeneration-Related Gene Networks
Frontiers in Neuroscience
Brain Science
MindScope

Shradha Mukherjee, Christine Klaus, Mihaela Pricop-Jeckstadt, Jeremy A. Miller, Felix L. Struebing

publication / 2019
An Inflammatory Landscape for Preoperative Neurologic Deficits in Glioblastoma
Frontiers in Genetics
Brain Science
MindScope

Amal Katrib, Hyun-Hwan Jeong, Nina L. Fransen, Kristin S. Henzel, Jeremy A. Miller

publication / 2019
Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse
PloS One
Brain Science
MindScope

Jack Waters, Eric Lee, Nathalie Gaudreault, Fiona Griffin, Jerome Lecoq, Cliff Slaughterbeck, David Sullivan, Colin Farrell, Jed Perkins, David Reid, David Feng, Nile Graddis, Marina Garrett, Yang Li, Fuhui Long, Chris Mochizuki, Kate Roll, Jun Zhuang, Carol Thompson

publication / 2019
High-resolution data-driven model of the mouse connectome
Network Neuroscience (Cambridge, Mass.)
Brain Science
MindScope

Joseph E. Knox, Kameron Decker Harris, Nile Graddis, Jennifer D. Whitesell, Hongkui Zeng, Julie A. Harris, Eric Shea-Brown, Stefan Mihalas

publication / 2019
Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas
PloS One
Brain Science
MindScope

Natalie Weed, Trygve Bakken, Nile Graddis, Nathan Gouwens, Daniel Millman, Michael Hawrylycz, Jack Waters

publication / 2019
Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity
Nature Genetics
Brain Science
MindScope

Bradley P. Coe, Holly A. F. Stessman, Arvis Sulovari, Madeleine R. Geisheker, Trygve E. Bakken, Allison M. Lake, Joseph D. Dougherty, Ed S. Lein, Fereydoun Hormozdiari, Raphael A. Bernier, Evan E. Eichler

publication / 2019
Two eARCHT3.0 Lines for Optogenetic Silencing of Dopaminergic and Serotonergic Neurons
Frontiers in Neural Circuits
Brain Science
MindScope

Alexandra Krol, Violeta G. Lopez-Huerta, Taylor E. C. Corey, Karl Deisseroth, Jonathan T. Ting, Guoping Feng

publication / 2018
Integrative functional genomic analysis of human brain development and neuropsychiatric risks
Science (New York, N.Y.)
Brain Science
MindScope

Mingfeng Li, Gabriel Santpere, Yuka Imamura Kawasawa, Oleg V. Evgrafov, Forrest O. Gulden, Sirisha Pochareddy, Susan M. Sunkin, Zhen Li, Yurae Shin, Ying Zhu, André M. M. Sousa, Donna M. Werling, Robert R. Kitchen, Hyo Jung Kang, Mihovil Pletikos, Jinmyung Choi, Sydney Muchnik, Xuming Xu, Daifeng Wang, Belen Lorente-Galdos, Shuang Liu, Paola Giusti-Rodríguez, Hyejung Won, Christiaan A. de Leeuw, Antonio F. Pardiñas, BrainSpan Consortium, PsychENCODE Consortium, PsychENCODE Developmental Subgroup, Ming Hu, Fulai Jin, Yun Li, Michael J. Owen, Michael C. O'Donovan, James T. R. Walters, Danielle Posthuma, Mark A. Reimers, Pat Levitt, Daniel R. Weinberger, Thomas M. Hyde, Joel E. Kleinman, Daniel H. Geschwind, Michael J. Hawrylycz, Matthew W. State, Stephan J. Sanders, Patrick F. Sullivan, Mark B. Gerstein, Ed S. Lein, James A. Knowles, Nenad Sestan

preprint / 2018
The Allen Cell Structure Segmenter: a new open source toolkit for segmenting 3D intracellular structures in fluorescence microscopy images
Cell Science

Jianxu Chen, Liya Ding, Matheus P. Viana, Melissa C. Hendershott, Ruian Yang, Irina A. Mueller, Susanne M. Rafelski

publication / 2018
h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex
Neuron
Brain Science
MindScope

Brian E. Kalmbach, Anatoly Buchin, Brian Long, Jennie Close, Anirban Nandi, Jeremy A. Miller, Trygve E. Bakken, Rebecca D. Hodge, Peter Chong, Rebecca de Frates, Kael Dai, Zoe Maltzer, Philip R. Nicovich, C. Dirk Keene, Daniel L. Silbergeld, Ryder P. Gwinn, Charles Cobbs, Andrew L. Ko, Jeffrey G. Ojemann, Christof Koch, Costas A. Anastassiou, Ed S. Lein, Jonathan T. Ting

publication / 2018
A simplified morphological classification scheme for pyramidal cells in six layers of primary somatosensory cortex of juvenile rats
IBRO reports
Brain Science
MindScope

Yun Wang, Min Ye, Xiuli Kuang, Yaoyao Li, Shisi Hu

publication / 2018
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections
Medical Image Analysis
Brain Science
MindScope

Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sebastien Ourselin, Alzheimer’s Disease Neuroimaging Initiative

publication / 2018
Transport and trapping of nanosheets via hydrodynamic forces and curvature-induced capillary quadrupolar interactions
Journal of Colloid and Interface Science
Brain Science
MindScope

Timothy J. Lee, Colby F. Lewallen, Daniel J. Bumbarger, Peter J. Yunker, R. Clay Reid, Craig R. Forest

publication / 2018
Publisher Correction: Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes
Scientific Reports
Brain Science
MindScope

Ali Shahbazi, Jeffery Kinnison, Rafael Vescovi, Ming Du, Robert Hill, Maximilian Joesch, Marc Takeno, Hongkui Zeng, Nuno Maçarico da Costa, Jaime Grutzendler, Narayanan Kasthuri, Walter J. Scheirer

publication / 2018
Paul G. Allen (1953–2018)
Science
Cell Science

Rick Horwitz, Allan Jones, Tom Daniel

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