Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
brain health
accelerating human brain research and disease therapeutics
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
brain health
accelerating human brain research and disease therapeutics
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
Heading
search

publications

explore publications from the allen institute

latest publications

2026
2025
2024
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
Brain and Consciousness
Brain Science
Cell Science
Education
Immunology
Neural Dynamics
Seattle Hub Team
Shanahan Fellowship
Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
publication / 2022
Variants of the adeno-associated virus serotype 9 with enhanced penetration of the blood–brain barrier in rodents and primates
Nature Biomedical Engineering
No items found.

Yizheng Yao, Jun Wang, Yi Liu, Yuan Qu, Kaikai Wang, Yang Zhang, Yuxin Chang, Zhi Yang, Jie Wan, Junfeng Liu, Hiroshi Nakashima, Sean E. Lawler, E. Antonio Chiocca, Choi-Fong Cho, Fengfeng Bei

publication / 2022
Modular, programmable RNA sensing using ADAR editing in living cells
Nature Biotechnology
No items found.

K. Eerik Kaseniit, Noa Katz, Natalie S. Kolber, Connor C. Call, Diego L. Wengier, Will B. Cody, Elizabeth S. Sattely, Xiaojing J. Gao

publication / 2022
The Neurodata Without Borders ecosystem for neurophysiological data science
eLife
Brain Science
MindScope

Oliver Rübel, Andrew Tritt, Ryan Ly, Benjamin K. Dichter, Satrajit Ghosh, Lawrence Niu, Pamela Baker, Ivan Soltesz, Lydia Ng, Karel Svoboda, Loren Frank, Kristofer E. Bouchard

publication / 2022
Ultraflexible electrode arrays for months-long high-density electrophysiological mapping of thousands of neurons in rodents
Nature Biomedical Engineering
No items found.

Zhengtuo Zhao, Hanlin Zhu, Xue Li, Liuyang Sun, Fei He, Jason E. Chung, Daniel F. Liu, Loren Frank, Lan Luan, Chong Xie

publication / 2022
Chemoarchitecture of area prostriata in adult and developing mice: Comparison with presubiculum and parasubiculum
The Journal of Comparative Neurology
Brain Science
MindScope

Sheng-Qiang Chen, Chang-Hui Chen, Xiao-Jun Xiang, Shun-Yu Zhang, Song-Lin Ding

publication / 2022
Human Inborn Errors of Immunity: 2022 Update on the Classification from the International Union of Immunological Societies Expert Committee
Journal of Clinical Immunology
MindScope
Brain Science

Stuart G. Tangye, Waleed Al-Herz, Aziz Bousfiha, Charlotte Cunningham-Rundles, Jose Luis Franco, Steven M. Holland, Christoph Klein, Tomohiro Morio, Eric Oksenhendler, Capucine Picard, Anne Puel, Jennifer Puck, Mikko R. J. Seppänen, Raz Somech, Helen C. Su, Kathleen E. Sullivan, Troy R. Torgerson, Isabelle Meyts

publication / 2022
Programmable RNA sensing for cell monitoring and manipulation
Nature
No items found.

Yongjun Qian, Jiayun Li, Shengli Zhao, Elizabeth A. Matthews, Michael Adoff, Weixin Zhong, Xu An, Michele Yeo, Christine Park, Xiaolu Yang, Bor-Shuen Wang, Derek G. Southwell, Z. Josh Huang

publication / 2022
Single cell atlas of spinal cord injury in mice reveals a pro-regenerative signature in spinocerebellar neurons
Nature Communications
Brain Science
MindScope

Kaya J. E. Matson, Daniel E. Russ, Claudia Kathe, Isabelle Hua, Dragan Maric, Yi Ding, Jonathan Krynitsky, Randall Pursley, Anupama Sathyamurthy, Jordan W. Squair, Boaz P. Levi, Gregoire Courtine, Ariel J. Levine

publication / 2022
Cardiovascular baroreflex circuit moonlights in sleep control
Neuron
Brain Science
MindScope

Yuanyuan Yao, Zeke Barger, Mohammad Saffari Doost, Chak Foon Tso, Dana Darmohray, Daniel Silverman, Danqian Liu, Chenyan Ma, Ali Cetin, Shenqin Yao, Hongkui Zeng, Yang Dan

publication / 2022
Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH
Nature Biotechnology
Brain Science
MindScope

Lars E. Borm, Alejandro Mossi Albiach, Camiel C. A. Mannens, Jokubas Janusauskas, Ceren Özgün, David Fernández-García, Rebecca Hodge, Francisca Castillo, Charlotte R. H. Hedin, Eduardo J. Villablanca, Per Uhlén, Ed S. Lein, Simone Codeluppi, Sten Linnarsson

publication / 2022
Antibody stabilization for thermally accelerated deep immunostaining
Nature Methods
No items found.

Hei Ming Lai, Yumi Tang, Zachary Y. H. Lau, Robert A. A. Campbell, Juno C. N. Yau, Caleb C. Y. Chan, Danny C. W. Chan, Tin Yan Wong, Harriet K. T. Wong, Leo Y. C. Yan, William K. K. Wu, Sunny H. Wong, Ka-Wai Kwok, Yun-Kwok Wing, Henry H. N. Lam, Ho-Keung Ng, Thomas D. Mrsic-Flogel, Vincent C. T. Mok, Jason Y. K. Chan, Ho Ko

publication / 2022
MouseNet: A biologically constrained convolutional neural network model for the mouse visual cortex
PLoS computational biology
Brain Science
MindScope

Jianghong Shi, Bryan Tripp, Eric Shea-Brown, Stefan Mihalas, Michael A Buice

publication / 2022
Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy
Cell
No items found.

Zhuohe Liu, Xiaoyu Lu, Vincent Villette, Yueyang Gou, Kevin L. Colbert, Shujuan Lai, Sihui Guan, Michelle A. Land, Jihwan Lee, Tensae Assefa, Daniel R. Zollinger, Maria M. Korympidou, Anna L. Vlasits, Michelle M. Pang, Sharon Su, Changjia Cai, Emmanouil Froudarakis, Na Zhou, Saumil S. Patel, Cameron L. Smith, Annick Ayon, Pierre Bizouard, Jonathan Bradley, Katrin Franke, Thomas R. Clandinin, Andrea Giovannucci, Andreas S. Tolias, Jacob Reimer, Stéphane Dieudonné, François St-Pierre

publication / 2022
Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling
eLife
Brain Science
MindScope

Anton Sumser, Maximilian Joesch, Peter Jonas, Yoav Ben-Simon

publication / 2022
A fly GWAS for purine metabolites identifies human FAM214 homolog medusa, which acts in a conserved manner to enhance hyperuricemia-driven pathologies by modulating purine metabolism and the inflammatory response
GeroScience
Brain Science
MindScope

Tyler A. U. Hilsabeck, Ru Liu-Bryan, Tracy Guo, Kenneth A. Wilson, Neelanjan Bose, Daniel Raftery, Jennifer N. Beck, Sven Lang, Kelly Jin, Christopher S. Nelson, Tal Oron, Marshall Stoller, Daniel Promislow, Rachel B. Brem, Robert Terkeltaub, Pankaj Kapahi

publication / 2022
Directed evolution of adeno-associated virus for efficient gene delivery to microglia
Nature Methods
No items found.

Rui Lin, Youtong Zhou, Ting Yan, Ruiyu Wang, Heng Li, Zhaofa Wu, Xinshuang Zhang, Xiangyu Zhou, Fei Zhao, Li Zhang, Yulong Li, Minmin Luo

publication / 2022
A scalable and modular automated pipeline for stitching of large electron microscopy datasets
eLife
Brain Science
MindScope

Gayathri Mahalingam, Russel Torres, Daniel Kapner, Eric T. Trautman, Tim Fliss, Shamishtaa Seshamani, Eric Perlman, Rob Young, Samuel Kinn, JoAnn Buchanan, Marc M. Takeno, Wenjing Yin, Daniel J. Bumbarger, Ryder P. Gwinn, Julie Nyhus, Ed Lein, Steven J. Smith, R. Clay Reid, Khaled A. Khairy, Stephan Saalfeld, Forrest Collman, Nuno Macarico da Costa

publication / 2022
What is a cell type and how to define it?
Cell
Brain Science
MindScope

Hongkui Zeng

Previous
load more publications

No results found, try reducing your search parameters.

we acceleratedevelopcatalyzeimpact

science done differently. shared openly.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

Brain Health

Accelerating human brain research and new therapeutic strategies for neurological conditions

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologybrain healthpublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings