Solving the mysteries of bioscience
Foundational Science Fuels Breakthroughs
Inspiring Next-Generation Scientists
Bio:
Shinya Ito is Scientist III in Anton Arkhipov’s team at the Allen Institute. He develops biologically realistic models of the mouse primary visual cortex, integrating electron-microscopy- and electrophysiology-derived connectivity with machine-learning optimization to reveal how circuit structure supports computation and to advance biologically grounded AI. Trained as a physicist (B.S., Hokkaido University), he earned a Ph.D. in Physics from Indiana University with John Beggs, mapping functional neuronal connectivity, and completed postdoctoral work at UC Santa Cruz with Alan Litke and David Feldheim, pioneering high-density silicon-probe recordings of the mouse superior colliculus to characterize its visual and auditory responses. Ito now combines large-scale simulations, TensorFlow-based training, and the Allen Institute’s in-house Brain Modeling ToolKit (BMTK), to which he is an active contributor, to build, train, and analyze realistic cortical networks.
Research Focus:
Preprint
Oct 23, 2023
Shinya Ito, Alex Piet, Corbett Bennett, Séverine Durand, Hannah Belski, Marina Garrett, Shawn R. Olsen, Anton Arkhipov
The Journal of Physiology
Dec 25, 2022
Darrell Haufler, Shinya Ito, Christof Koch, Anton Arkhipov
eNeuro
Jun 01, 2022
Yufei Si, Shinya Ito, Alan M. Litke, David A. Feldheim
Science (New York, N.Y.)
Mar 11, 2022
Luke Campagnola, Stephanie C. Seeman, Thomas Chartrand, Lisa Kim, Alex Hoggarth, Clare Gamlin, Shinya Ito, Jessica Trinh, Pasha Davoudian, Cristina Radaelli, Mean-Hwan Kim, Travis Hage, Thomas Braun, Lauren Alfiler, Julia Andrade, Phillip Bohn, Rachel Dalley, Alex Henry, Sara Kebede, Mukora Alice, David Sandman, Grace Williams, Rachael Larsen, Corinne Teeter, Tanya L. Daigle, Kyla Berry, Nadia Dotson, Rachel Enstrom, Melissa Gorham, Madie Hupp, Samuel Dingman Lee, Kiet Ngo, Philip R. Nicovich, Lydia Potekhina, Shea Ransford, Amanda Gary, Jeff Goldy, Delissa McMillen, Trangthanh Pham, Michael Tieu, La'Akea Siverts, Miranda Walker, Colin Farrell, Martin Schroedter, Cliff Slaughterbeck, Charles Cobb, Richard Ellenbogen, Ryder P. Gwinn, C. Dirk Keene, Andrew L. Ko, Jeffrey G. Ojemann, Daniel L. Silbergeld, Daniel Carey, Tamara Casper, Kirsten Crichton, Michael Clark, Nick Dee, Lauren Ellingwood, Jessica Gloe, Matthew Kroll, Josef Sulc, Herman Tung, Katherine Wadhwani, Krissy Brouner, Tom Egdorf, Michelle Maxwell, Medea McGraw, Christina Alice Pom, Augustin Ruiz, Jasmine Bomben, David Feng, Nika Hejazinia, Shu Shi, Aaron Szafer, Wayne Wakeman, John Phillips, Amy Bernard, Luke Esposito, Florence D. D'Orazi, Susan Sunkin, Kimberly Smith, Bosiljka Tasic, Anton Arkhipov, Staci Sorensen, Ed Lein, Christof Koch, Gabe Murphy, Hongkui Zeng, Tim Jarsky
PLoS computational biology
Nov 01, 2021
Shinya Ito, Yufei Si, Alan M. Litke, David A. Feldheim