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publication / 2021
Transcriptional network orchestrating regional patterning of cortical progenitors
Proceedings of the National Academy of Sciences of the United States of America
Brain Science
MindScope

Athéna R. Ypsilanti, Kartik Pattabiraman, Rinaldo Catta-Preta, Olga Golonzhka, Susan Lindtner, Ke Tang, Ian R. Jones, Armen Abnousi, Ivan Juric, Ming Hu, Yin Shen, Diane E. Dickel, Axel Visel, Len A. Pennachio, Michael Hawrylycz, Carol L. Thompson, Hongkui Zeng, Iros Barozzi, Alex S. Nord, John L. Rubenstein

10.1073/pnas.2024795118
Brain Science
publication / 2021
A novel red fluorescence dopamine biosensor selectively detects dopamine in the presence of norepinephrine in vitro
Molecular Brain
No items found.

Chihiro Nakamoto, Yuhei Goto, Yoko Tomizawa, Yuko Fukata, Masaki Fukata, Kasper Harpsøe, David E. Gloriam, Kazuhiro Aoki, Tomonori Takeuchi

publication / 2021
It's time to incorporate diversity into our basic science and disease models
Nature Cell Biology
Cell Science

Rick Horwitz, Ekemini A. U. Riley, Maria T. Millan, Ruwanthi N. Gunawardane

10.1038/s41556-021-00803-w
Cell Science, External Collaboration, Newsletter, Opinion, Perspective
publication / 2021
Structure and function of axo-axonic inhibition
eLife
Brain Science
MindScope

Casey M. Schneider-Mizell, Agnes L. Bodor, Forrest Collman, Derrick Brittain, Adam Bleckert, Sven Dorkenwald, Nicholas L. Turner, Thomas Macrina, Kisuk Lee, Ran Lu, Jingpeng Wu, Jun Zhuang, Anirban Nandi, Brian Hu, JoAnn Buchanan, Marc M. Takeno, Russel Torres, Gayathri Mahalingam, Daniel J. Bumbarger, Yang Li, Thomas Chartrand, Nico Kemnitz, William M. Silversmith, Dodam Ih, Jonathan Zung, Aleksandar Zlateski, Ignacio Tartavull, Sergiy Popovych, William Wong, Manuel Castro, Chris S. Jordan, Emmanouil Froudarakis, Lynne Becker, Shelby Suckow, Jacob Reimer, Andreas S. Tolias, Costas A. Anastassiou, H. Sebastian Seung, R. Clay Reid, Nuno Maçarico da Costa

publication / 2021
Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Nature Methods
Cell Science

Mathias Hammer, Maximiliaan Huisman, Alessandro Rigano, Ulrike Boehm, James J. Chambers, Nathalie Gaudreault, Alison J. North, Jaime A. Pimentel, Damir Sudar, Peter Bajcsy, Claire M. Brown, Alexander D. Corbett, Orestis Faklaris, Judith Lacoste, Alex Laude, Glyn Nelson, Roland Nitschke, Farzin Farzam, Carlas S. Smith, David Grunwald, Caterina Strambio-De-Castillia

10.1038/s41592-021-01327-9
Cell Science, External Collaboration, Newsletter, Opinion, Perspective
publication / 2021
Transcriptomic evidence for dense peptidergic networks within forebrains of four widely divergent tetrapods
Current Opinion in Neurobiology
Brain Science
MindScope

Stephen J. Smith

10.1016/j.conb.2021.09.011
AIBS First Author, AIBS Last Author, Brain Science
publication / 2021
CellExplorer: A framework for visualizing and characterizing single neurons
Neuron
Brain Science
MindScope

Peter C. Petersen, Joshua H. Siegle, Nicholas A. Steinmetz, Sara Mahallati, György Buzsáki

10.1016/j.neuron.2021.09.002
MindScope Program
publication / 2021
Anatomical structures, cell types and biomarkers of the Human Reference Atlas
Nature Cell Biology
Brain Science
MindScope

Katy Börner, Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland, Bruce W. Herr, Andreas Bueckle, Hrishikesh Paul, Muzlifah Haniffa, Laura Jardine, Amy Bernard, Song-Lin Ding, Jeremy A. Miller, Shin Lin, Marc K. Halushka, Avinash Boppana, Teri A. Longacre, John Hickey, Yiing Lin, M. Todd Valerius, Yongqun He, Gloria Pryhuber, Xin Sun, Marda Jorgensen, Andrea J. Radtke, Clive Wasserfall, Fiona Ginty, Jonhan Ho, Joel Sunshine, Rebecca T. Beuschel, Maigan Brusko, Sujin Lee, Rajeev Malhotra, Sanjay Jain, Griffin Weber

publication / 2021
Cell type ontologies of the Human Cell Atlas
Nature Cell Biology
Brain Science
MindScope

David Osumi-Sutherland, Chuan Xu, Maria Keays, Adam P. Levine, Peter V. Kharchenko, Aviv Regev, Ed Lein, Sarah A. Teichmann

10.1038/s41556-021-00787-7
Brain Science
publication / 2021
Cross-population coupling of neural activity based on Gaussian process current source densities
PLoS computational biology
Brain Science
MindScope

Natalie Klein, Joshua H. Siegle, Tobias Teichert, Robert E. Kass

10.1371/journal.pcbi.1009601
MindScope Program
publication / 2021
Nonlinear visuoauditory integration in the mouse superior colliculus
PLoS computational biology
Brain Science
MindScope

Shinya Ito, Yufei Si, Alan M. Litke, David A. Feldheim

publication / 2021
Removing independent noise in systems neuroscience data using DeepInterpolation
Nature Methods
Brain Science
MindScope

Jérôme Lecoq, Michael Oliver, Joshua H. Siegle, Natalia Orlova, Peter Ledochowitsch, Christof Koch

10.1038/s41592-021-01285-2
MindScope Program
publication / 2021
Cortical Responses to Vagus Nerve Stimulation Are Modulated by Brain State in Nonhuman Primates
Cerebral Cortex (New York, N.Y.: 1991)
Brain Science
MindScope

Irene Rembado, Weiguo Song, David K. Su, Ariel Levari, Larry E. Shupe, Steve Perlmutter, Eberhard Fetz, Stavros Zanos

publication / 2021
Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex
Cell Reports
Brain Science
MindScope

Jun Zhuang, Yun Wang, Naveen D. Ouellette, Emily E. Turschak, Rylan S. Larsen, Kevin T. Takasaki, Tanya L. Daigle, Bosiljka Tasic, Jack Waters, Hongkui Zeng, R. Clay Reid

10.1016/j.celrep.2021.109826
AIBS First Author, AIBS Last Author, Brain Science
publication / 2021
Embodied intelligence via learning and evolution
Nature Communications
No items found.

Agrim Gupta, Silvio Savarese, Surya Ganguli, Li Fei-Fei

publication / 2021
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing
Genome Research
Brain Science
MindScope

Brian Aevermann, Yun Zhang, Mark Novotny, Mohamed Keshk, Trygve Bakken, Jeremy Miller, Rebecca Hodge, Boudewijn Lelieveldt, Ed Lein, Richard H. Scheuermann

10.1101/gr.275569.121
Brain Science
publication / 2021
A multimodal cell census and atlas of the mammalian primary motor cortex
Nature
Brain Science
MindScope

BRAIN Initiative Cell Census Network (BICCN)

10.1038/s41586-021-03950-0
Brain Science
publication / 2021
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Nature
Brain Science
MindScope

Zizhen Yao, Hanqing Liu, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge, Seth A. Ament, Anna Bartlett, M. Margarita Behrens, Koen Van den Berge, Darren Bertagnolli, Hector Roux de Bézieux, Tommaso Biancalani, A. Sina Booeshaghi, Héctor Corrada Bravo, Tamara Casper, Carlo Colantuoni, Jonathan Crabtree, Heather Creasy, Kirsten Crichton, Megan Crow, Nick Dee, Elizabeth L. Dougherty, Wayne I. Doyle, Sandrine Dudoit, Rongxin Fang, Victor Felix, Olivia Fong, Michelle Giglio, Jeff Goldy, Mike Hawrylycz, Brian R. Herb, Ronna Hertzano, Xiaomeng Hou, Qiwen Hu, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Yang Eric Li, Jacinta D. Lucero, Chongyuan Luo, Anup Mahurkar, Delissa McMillen, Naeem M. Nadaf, Joseph R. Nery, Thuc Nghi Nguyen, Sheng-Yong Niu, Vasilis Ntranos, Joshua Orvis, Julia K. Osteen, Thanh Pham, Antonio Pinto-Duarte, Olivier Poirion, Sebastian Preissl, Elizabeth Purdom, Christine Rimorin, Davide Risso, Angeline C. Rivkin, Kimberly Smith, Kelly Street, Josef Sulc, Valentine Svensson, Michael Tieu, Amy Torkelson, Herman Tung, Eeshit Dhaval Vaishnav, Charles R. Vanderburg, Cindy van Velthoven, Xinxin Wang, Owen R. White, Z. Josh Huang, Peter V. Kharchenko, Lior Pachter, John Ngai, Aviv Regev, Bosiljka Tasic, Joshua D. Welch, Jesse Gillis, Evan Z. Macosko, Bing Ren, Joseph R. Ecker, Hongkui Zeng, Eran A. Mukamel

10.1038/s41586-021-03500-8
AIBS First Author, Brain Science
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