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publication / 2021
A Course-Based Research Experience Using the Allen Brain Map: From Research Question to Poster Session
Journal of undergraduate neuroscience education: JUNE: a publication of FUN, Faculty for Undergraduate Neuroscience
Brain Science
MindScope

Jim Ryan, Kaitlyn Casimo

publication / 2021
A Multisubcellular Compartment Model of AMPA Receptor Trafficking for Neuromodulation of Hebbian Synaptic Plasticity
Frontiers in Synaptic Neuroscience
Brain Science
MindScope

Stefan Mihalas, Alvaro Ardiles, Kaiwen He, Adrian Palacios, Alfredo Kirkwood

publication / 2021
Comprehensive Analysis of Long-Range Connectivity from and to the Posterior Parietal Cortex of the Mouse
Cerebral Cortex (New York, N.Y.: 1991)
Brain Science
MindScope

Seung Wook Oh, Sook Jin Son, John A. Morris, Joon Ho Choi, Changkyu Lee, Jong-Cheol Rah

publication / 2021
Computational Models of Interoception and Body Regulation
Trends in Neurosciences
Brain Science
MindScope

Frederike H. Petzschner, Sarah N. Garfinkel, Martin P. Paulus, Christof Koch, Sahib S. Khalsa

publication / 2021
Multi-Scale Light-Sheet Fluorescence Microscopy for Fast Whole Brain Imaging
Frontiers in Neuroanatomy
Brain Science
MindScope

Zhouzhou Zhang, Xiao Yao, Xinxin Yin, Zhangcan Ding, Tianyi Huang, Yan Huo, Runan Ji, Hanchuan Peng, Zengcai V. Guo

publication / 2021
Rodent Area Prostriata Converges Multimodal Hierarchical Inputs and Projects to the Structures Important for Visuomotor Behaviors
Frontiers in Neuroscience
Brain Science
MindScope

Chang-Hui Chen, Jin-Meng Hu, Shun-Yu Zhang, Xiao-Jun Xiang, Sheng-Qiang Chen, Song-Lin Ding

publication / 2021
The Delayed Neuropathological Consequences of Traumatic Brain Injury in a Community-Based Sample
Frontiers in Neurology
Brain Science
MindScope

Nadia Postupna, Shannon E. Rose, Laura E. Gibbons, Natalie M. Coleman, Leanne L. Hellstern, Kayla Ritchie, Angela M. Wilson, Eiron Cudaback, Xianwu Li, Erica J. Melief, Allison E. Beller, Jeremy A. Miller, Amber L. Nolan, Desiree A. Marshall, Rod Walker, Thomas J. Montine, Eric B. Larson, Paul K. Crane, Richard G. Ellenbogen, Edward S. Lein, Kristen Dams-O'Connor, C. Dirk Keene

publication / 2020
Common cell type nomenclature for the mammalian brain
eLife
Brain Science
MindScope

Jeremy A. Miller, Nathan W. Gouwens, Bosiljka Tasic, Forrest Collman, Cindy Tj van Velthoven, Trygve E. Bakken, Michael J. Hawrylycz, Hongkui Zeng, Ed S. Lein, Amy Bernard

preprint / 2020
Automated hiPSC culture and sample preparation for 3D live cell microscopy
Cell Science

Mackenzie E. Coston, Benjamin W. Gregor, Joy Arakaki, Antoine Borensztejn, Thao P. Do, Margaret A. Fuqua, Amanda Haupt, Melissa C. Hendershott, Winnie Leung, Irina A. Mueller, Angelique M. Nelson, Susanne M. Rafelski, Madison J. Swain-Bowden, W. Joyce Tang, Derek J. Thirstrup, Winfried Wiegraebe, Calysta Yan, Ruwanthi N. Gunawardane, Nathalie Gaudreault

preprint / 2020
Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable?
Cell Science

Matheus P. Viana, Jianxu Chen, Theo A. Knijnenburg, Ritvik Vasan, Calysta Yan, Joy E. Arakaki, Matte Bailey, Ben Berry, Antoine Borensztejn, Jackson M. Brown, Sara Carlson, Julie A. Cass, Basudev Chaudhuri, Kimberly R. Cordes Metzler, Mackenzie E. Coston, Zach J. Crabtree, Steve Davidson, Colette M. DeLizo, Shailja Dhaka, Stephanie Q. Dinh, Thao P. Do, Justin Domingus, Rory M. Donovan-Maiye, Tyler J. Foster, Christopher L. Frick, Griffin Fujioka, Margaret A. Fuqua, Jamie L. Gehring, Kaytlyn A. Gerbin, Tanya Grancharova, Benjamin W. Gregor, Lisa Harrylock, Amanda Haupt, Melissa C. Hendershott, Caroline Hookway, Alan R. Horwitz, Chris Hughes, Eric J. Isaac, Gregory R. Johnson, Brian Kim, Andrew N. Leonard, Winnie Leung, Jordan J. Lucas, Susan A. Ludmann, Blair M. Lyons, Haseeb Malik, Ryan McGregor, Gabe E. Medrash, Sean L. Meharry, Kevin Mitcham, Irina A. Mueller, Timothy L. Murphy-Stevens, Aditya Nath, Angelique M. Nelson, Luana Paleologu, T. Alexander Popiel, Megan M. Riel-Mehan, Brock Roberts, Lisa M. Schaefbauer, Magdalena Schwarzl, Jamie Sherman, Sylvain Slaton, M. Filip Sluzewski, Jacqueline E. Smith, Youngmee Sul, Madison J. Swain-Bowden, W. Joyce Tang, Derek J. Thirstrup, Daniel T. Toloudis, Andrew P. Tucker, Veronica Valencia, Winfried Wiegraebe, Thushara Wijeratna, Ruian Yang, Rebecca J. Zaunbrecher, Allen Institute for Cell Science, Graham T. Johnson, Ruwanthi N. Gunawardane, Nathalie Gaudreault, Julie A. Theriot, Susanne M. Rafelski

publication / 2020
CaMKIIα-Positive Interneurons Identified via a microRNA-Based Viral Gene Targeting Strategy
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Marianna K. Keaveney, Bahar Rahsepar, Hua-An Tseng, Fernando R. Fernandez, Rebecca A. Mount, Tina Ta, John A. White, Jim Berg, Xue Han

publication / 2020
A ventrolateral medulla-midline thalamic circuit for hypoglycemic feeding
Nature Communications
Brain Science
MindScope

B. Sofia Beas, Xinglong Gu, Yan Leng, Omar Koita, Shakira Rodriguez-Gonzalez, Morgan Kindel, Bridget A. Matikainen-Ankney, Rylan S. Larsen, Alexxai V. Kravitz, Mark A. Hoon, Mario A. Penzo

publication / 2020
A community-based transcriptomics classification and nomenclature of neocortical cell types
Nature Neuroscience
Brain Science
MindScope

Rafael Yuste, Michael Hawrylycz, Nadia Aalling, Argel Aguilar-Valles, Detlev Arendt, Ruben Armañanzas, Giorgio A. Ascoli, Concha Bielza, Vahid Bokharaie, Tobias Borgtoft Bergmann, Irina Bystron, Marco Capogna, YoonJeung Chang, Ann Clemens, Christiaan P. J. de Kock, Javier DeFelipe, Sandra Esmeralda Dos Santos, Keagan Dunville, Dirk Feldmeyer, Richárd Fiáth, Gordon James Fishell, Angelica Foggetti, Xuefan Gao, Parviz Ghaderi, Natalia A. Goriounova, Onur Güntürkün, Kenta Hagihara, Vanessa Jane Hall, Moritz Helmstaedter, Suzana Herculano-Houzel, Markus M. Hilscher, Hajime Hirase, Jens Hjerling-Leffler, Rebecca Hodge, Josh Huang, Rafiq Huda, Konstantin Khodosevich, Ole Kiehn, Henner Koch, Eric S. Kuebler, Malte Kühnemund, Pedro Larrañaga, Boudewijn Lelieveldt, Emma Louise Louth, Jan H. Lui, Huibert D. Mansvelder, Oscar Marin, Julio Martinez-Trujillo, Homeira Moradi Chameh, Alok Nath Mohapatra, Hermany Munguba, Maiken Nedergaard, Pavel Němec, Netanel Ofer, Ulrich Gottfried Pfisterer, Samuel Pontes, William Redmond, Jean Rossier, Joshua R. Sanes, Richard H. Scheuermann, Esther Serrano-Saiz, Jochen F. Staiger, Peter Somogyi, Gábor Tamás, Andreas Savas Tolias, Maria Antonietta Tosches, Miguel Turrero García, Christian Wozny, Thomas V. Wuttke, Yong Liu, Juan Yuan, Hongkui Zeng, Ed Lein

publication / 2020
A standardized head-fixation system for performing large-scale, in vivo physiological recordings in mice
Journal of Neuroscience Methods
Brain Science
MindScope
Neural Dynamics

P. A. Groblewski, D. Sullivan, J. Lecoq, S. E. J. de Vries, S. Caldejon, Q. L'Heureux, T. Keenan, K. Roll, C. Slaughterback, A. Williford, C. Farrell

publication / 2020
Linking axon morphology to gene expression: a strategy for neuronal cell-type classification
Current Opinion in Neurobiology
Brain Science
MindScope

Johan Winnubst, Nelson Spruston, Julie A. Harris

publication / 2020
Network structure of the mouse brain connectome with voxel resolution
Science Advances
Brain Science
MindScope

Ludovico Coletta, Marco Pagani, Jennifer D. Whitesell, Julie A. Harris, Boris Bernhardt, Alessandro Gozzi

publication / 2020
Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
Cell
Brain Science
MindScope

Nathan W. Gouwens, Staci A. Sorensen, Fahimeh Baftizadeh, Agata Budzillo, Brian R. Lee, Tim Jarsky, Lauren Alfiler, Katherine Baker, Eliza Barkan, Kyla Berry, Darren Bertagnolli, Kris Bickley, Jasmine Bomben, Thomas Braun, Krissy Brouner, Tamara Casper, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Rebecca A. de Frates, Nick Dee, Tsega Desta, Samuel Dingman Lee, Nadezhda Dotson, Tom Egdorf, Lauren Ellingwood, Rachel Enstrom, Luke Esposito, Colin Farrell, David Feng, Olivia Fong, Rohan Gala, Clare Gamlin, Amanda Gary, Alexandra Glandon, Jeff Goldy, Melissa Gorham, Lucas Graybuck, Hong Gu, Kristen Hadley, Michael J. Hawrylycz, Alex M. Henry, DiJon Hill, Madie Hupp, Sara Kebede, Tae Kyung Kim, Lisa Kim, Matthew Kroll, Changkyu Lee, Katherine E. Link, Matthew Mallory, Rusty Mann, Michelle Maxwell, Medea McGraw, Delissa McMillen, Alice Mukora, Lindsay Ng, Lydia Ng, Kiet Ngo, Philip R. Nicovich, Aaron Oldre, Daniel Park, Hanchuan Peng, Osnat Penn, Thanh Pham, Alice Pom, Zoran Popović, Lydia Potekhina, Ramkumar Rajanbabu, Shea Ransford, David Reid, Christine Rimorin, Miranda Robertson, Kara Ronellenfitch, Augustin Ruiz, David Sandman, Kimberly Smith, Josef Sulc, Susan M. Sunkin, Aaron Szafer, Michael Tieu, Amy Torkelson, Jessica Trinh, Herman Tung, Wayne Wakeman, Katelyn Ward, Grace Williams, Zhi Zhou, Jonathan T. Ting, Anton Arkhipov, Uygar Sümbül, Ed S. Lein, Christof Koch, Zizhen Yao, Bosiljka Tasic, Jim Berg, Gabe J. Murphy, Hongkui Zeng

publication / 2020
SpikeInterface, a unified framework for spike sorting
eLife
Brain Science
MindScope

Alessio P. Buccino, Cole L. Hurwitz, Samuel Garcia, Jeremy Magland, Joshua H. Siegle, Roger Hurwitz, Matthias H. Hennig

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