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education
exploring cell division and cell structures through open data

quantitative analysis of stem cell images

Analyze measurements of cell volume, DNA height, and more in an open dataset of thousands of stem cell microscopy images

resource type / 
Lesson(s)
published / July 9, 2026
education level / 
Undergraduate
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lessons & resources in this unit

an introduction to mitosis using real cell images
interactive 3D model of cell division
identifying mitotic stages in a large image dataset
exploring organelle localization throughout mitosis
introduction to the Cell Feature Explorer (CFE)

in this lesson

table of contents will display on published page only
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contributors

Madison Meuler
Education and Engagement Specialist II
Claire Weichselbaum
Education & Engagement Specialist III
Kaitlyn Casimo
Senior Manager, Education & Engagement
Gideon Dunster
Scientific Program Manager
Carlos Goller
Teaching Professor, North Carolina State University

This three-part activity consists of three lessons that explore the Cell Feature Explorer (CFE), an open access tool that allows users to view over 200,000 real stem cell images in three dimensions and sort by cell structure of interest.  

In lesson 1, students are introduced to this tool within the context of mitosis and are asked to create their own cell gallery of example cell images representing the different stages of mitosis. This lesson is also available as a stand-alone resource.  

In lessons 2 and 3, students are challenged to design their own experiment that can be done using the data available within the CFE. Students use excel to quantitatively analyze trends in cell structures within the dataset and share their findings in a scientific figure.  

learning objectives

  • Define human induced pluripotent stem cells (hiPSCs) ‍
  • Describe how fluorescent microscopy images are collected and processed at the Allen Institute for Cell Science
  • ‍Observe images of cells undergoing mitosis using the Cell Feature Explorer  ‍
  • Interpret cell images to classify them by cell cycle stage ‍
  • Interpret scatterplots and bar graphs in terms of the relationship between an independent and dependent variable ‍
  • Create scatterplots in the Cell Feature Explorer and bar graphs in Excel to investigate the relationship between two variables ‍
  • Develop a question and hypothesis related to mitosis that can be investigated with the Cell Feature Explorer data ‍
  • Analyze data from the Cell Feature Explorer dataset to investigate a question related to mitosis  ‍
  • Interpret results in terms of cell cycle knowledge

materials

  • Instructor Guide
  • Open image dataset
  • Slides
  • Scientific figure template
  • Virtual lab notebook template
  • Tutorial videos
download materials

terms of use/

This work is licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0). To view a copy of this license, visit https://creativecommons.org/licenses/by-nc-sa/4.0/.

funding acknowledgement/

The development of this lesson was supported by the National Science Foundation under Award Number 2236366. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Science Foundation.

Last updated March 2026

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