Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search

publications

explore publications from the allen institute

latest publications

2026
2025
2024
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
Brain and Consciousness
Brain Science
Cell Science
Education
Immunology
Neural Dynamics
Seattle Hub Team
Shanahan Fellowship
Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
publication / 2015
BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies
Neuroinformatics
Brain Science
MindScope
Michael Hawrylycz
publication / 2015
SmartTracing: self-learning-based Neuron reconstruction
Brain Informatics
Brain Science
MindScope
This is some text inside of a div block.
publication / 2015
Local Field Potentials Encode Place Cell Ensemble Activation during Hippocampal Sharp Wave Ripples
Neuron
Brain Science
MindScope
Christof Koch
publication / 2015
Spatiotemporal dynamics of the postnatal developing primate brain transcriptome
Human Molecular Genetics
Brain Science
MindScope
Bert Bertagnolli
publication / 2015
Electron Microscopy at Scale
Cell
Brain Science
MindScope
Hongkui Zeng
publication / 2015
Validation of optical voltage reporting by the genetically encoded voltage indicator VSFP-Butterfly from cortical layer 2/3 pyramidal neurons in mouse brain slices
Physiological Reports
Brain Science
MindScope
Hongkui Zeng
publication / 2015
BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images
Neuron
Brain Science
MindScope
Michael Hawrylycz
publication / 2015
Cell type- and activity-dependent extracellular correlates of intracellular spiking
Journal of Neurophysiology
Brain Science
MindScope
Christof Koch
publication / 2015
Emergence of Slow-Switching Assemblies in Structured Neuronal Networks
PLoS computational biology
Brain Science
MindScope
Christof Koch
publication / 2015
Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture
Nature Methods
Brain Science
MindScope
This is some text inside of a div block.
publication / 2015
BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks
Science (New York, N.Y.)
Brain Science
MindScope
This is some text inside of a div block.
publication / 2015
Automated High-Throughput Characterization of Single Neurons by Means of Simplified Spiking Models
PLoS computational biology
Brain Science
MindScope
Richard Naud
Christof Koch
publication / 2015
Closed-loop, ultraprecise, automated craniotomies
Journal of Neurophysiology
Brain Science
MindScope
This is some text inside of a div block.
publication / 2015
Global analysis of gene expression and projection target correlations in the mouse brain
Brain Informatics
Brain Science
MindScope
This is some text inside of a div block.
publication / 2015
Genome engineering of isogenic human ES cells to model autism disorders
Nucleic Acids Research
Brain Science
MindScope
Zizhen Yao
publication / 2015
Induction of a common microglia gene expression signature by aging and neurodegenerative conditions: a co-expression meta-analysis
Acta Neuropathologica Communications
Brain Science
MindScope
This is some text inside of a div block.
publication / 2015
Lineage Tracing Using Cux2-Cre and Cux2-CreERT2 Mice
Neuron
Brain Science
MindScope
Hongkui Zeng
publication / 2015
Consciousness: here, there and everywhere?
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences
Brain Science
MindScope
Christof Koch
Previous
load more publications

No results found, try reducing your search parameters.

we acceleratedevelopcatalyzeimpact

science done differently. shared openly.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings