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publication / 2016
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
Nature Protocols
Brain Science
MindScope

Suguna Rani Krishnaswami, Rashel V. Grindberg, Mark Novotny, Pratap Venepally, Benjamin Lacar, Kunal Bhutani, Sara B. Linker, Son Pham, Jennifer A. Erwin, Jeremy A. Miller, Rebecca Hodge, James K. McCarthy, Martin Kelder, Jamison McCorrison, Brian D. Aevermann, Francisco Diez Fuertes, Richard H. Scheuermann, Jun Lee, Ed S. Lein, Nicholas Schork, Michael J. McConnell, Fred H. Gage, Roger S. Lasken

publication / 2016
Layer specific and general requirements for ERK/MAPK signaling in the developing neocortex
eLife
Brain Science
MindScope

Lei Xing, Rylan S. Larsen, George Reed Bjorklund, Xiaoyan Li, Yaohong Wu, Benjamin D. Philpot, William D. Snider, Jason M. Newbern

publication / 2016
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Nature Neuroscience
Brain Science
MindScope

Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T. Gray, Staci A. Sorensen, Tim Dolbeare, Darren Bertagnolli, Jeff Goldy, Nadiya Shapovalova, Sheana Parry, Changkyu Lee, Kimberly Smith, Amy Bernard, Linda Madisen, Susan M. Sunkin, Michael Hawrylycz, Christof Koch, Hongkui Zeng

publication / 2016
Resolution of High-Frequency Mesoscale Intracortical Maps Using the Genetically Encoded Glutamate Sensor iGluSnFR
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Yicheng Xie, Allen W. Chan, Alexander McGirr, Songchao Xue, Dongsheng Xiao, Hongkui Zeng, Timothy H. Murphy

publication / 2016
Analytical Calculation of Errors in Time and Value Perception Due to a Subjective Time Accumulator: A Mechanistic Model and the Generation of Weber's Law
Neural Computation
Brain Science
MindScope

Vijay Mohan K. Namboodiri, Stefan Mihalas, Marshall G. Hussain Shuler

publication / 2016
Bioimage Informatics for Big Data
Advances in Anatomy, Embryology, and Cell Biology
Brain Science
MindScope

Hanchuan Peng, Jie Zhou, Zhi Zhou, Alessandro Bria, Yujie Li, Dean Mark Kleissas, Nathan G. Drenkow, Brian Long, Xiaoxiao Liu, Hanbo Chen

publication / 2016
Characterization of Channelrhodopsin and Archaerhodopsin in Cholinergic Neurons of Cre-Lox Transgenic Mice
PloS One
Brain Science
MindScope

Tristan Hedrick, Bethanny Danskin, Rylan S. Larsen, Doug Ollerenshaw, Peter Groblewski, Matthew Valley, Shawn Olsen, Jack Waters

publication / 2016
Fixed single-cell transcriptomic characterization of human radial glial diversity
Nature Methods
Brain Science
MindScope

Elliot R. Thomsen, John K. Mich, Zizhen Yao, Rebecca D. Hodge, Adele M. Doyle, Sumin Jang, Soraya I. Shehata, Angelique M. Nelson, Nadiya V. Shapovalova, Boaz P. Levi, Sharad Ramanathan

publication / 2016
Roles of Presynaptic NMDA Receptors in Neurotransmission and Plasticity
Trends in Neurosciences
Brain Science
MindScope

Abhishek Banerjee, Rylan S. Larsen, Benjamin D. Philpot, Ole Paulsen

publication / 2016
TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections
Neuroinformatics
Brain Science
MindScope

Zhi Zhou, Xiaoxiao Liu, Brian Long, Hanchuan Peng

publication / 2016
Two-Photon Holographic Stimulation of ReaChR
Frontiers in Cellular Neuroscience
Brain Science
MindScope

Emmanuelle Chaigneau, Emiliano Ronzitti, Marta A. Gajowa, Gilberto J. Soler-Llavina, Dimitrii Tanese, Anthony Y. B. Brureau, Eirini Papagiakoumou, Hongkui Zeng, Valentina Emiliani

publication / 2015
3D Image-Guided Automatic Pipette Positioning for Single Cell Experiments in vivo
Scientific Reports
Brain Science
MindScope

Brian Long, Lu Li, Ulf Knoblich, Hongkui Zeng, Hanchuan Peng

publication / 2015
Canonical genetic signatures of the adult human brain
Nature Neuroscience
Brain Science
MindScope

Michael Hawrylycz, Jeremy A. Miller, Vilas Menon, David Feng, Tim Dolbeare, Angela L. Guillozet-Bongaarts, Anil G. Jegga, Bruce J. Aronow, Chang-Kyu Lee, Amy Bernard, Matthew F. Glasser, Donna L. Dierker, Jörg Menche, Aaron Szafer, Forrest Collman, Pascal Grange, Kenneth A. Berman, Stefan Mihalas, Zizhen Yao, Lance Stewart, Albert-László Barabási, Jay Schulkin, John Phillips, Lydia Ng, Chinh Dang, David R. Haynor, Allan Jones, David C. Van Essen, Christof Koch, Ed Lein

publication / 2015
Synapse-type-specific plasticity in local circuits
Current Opinion in Neurobiology
Brain Science
MindScope

Rylan S. Larsen, P. Jesper Sjöström

publication / 2015
Neurodata Without Borders: Creating a Common Data Format for Neurophysiology
Neuron
Brain Science
MindScope

Jeffery L. Teeters, Keith Godfrey, Rob Young, Chinh Dang, Claudia Friedsam, Barry Wark, Hiroki Asari, Simon Peron, Nuo Li, Adrien Peyrache, Gennady Denisov, Joshua H. Siegle, Shawn R. Olsen, Christopher Martin, Miyoung Chun, Shreejoy Tripathy, Timothy J. Blanche, Kenneth Harris, György Buzsáki, Christof Koch, Markus Meister, Karel Svoboda, Friedrich T. Sommer

publication / 2015
Identifying robust communities and multi-community nodes by combining top-down and bottom-up approaches to clustering
Scientific Reports
Brain Science
MindScope

Chris Gaiteri, Mingming Chen, Boleslaw Szymanski, Konstantin Kuzmin, Jierui Xie, Changkyu Lee, Timothy Blanche, Elias Chaibub Neto, Su-Chun Huang, Thomas Grabowski, Tara Madhyastha, Vitalina Komashko

publication / 2015
Organization and Detailed Parcellation of Human Hippocampal Head and Body Regions Based on a Combined Analysis of Cyto- and Chemoarchitecture
The Journal of Comparative Neurology
Brain Science
MindScope

Song-Lin Ding, Gary W. Van Hoesen

publication / 2015
A Biological Imitation Game
Cell
Brain Science
MindScope

Christof Koch, Michael A. Buice

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