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publication / 2017
Developmental broadening of inhibitory sensory maps
Nature Neuroscience
Brain Science
MindScope

Kathleen B. Quast, Kevin Ung, Emmanouil Froudarakis, Longwen Huang, Isabella Herman, Angela P. Addison, Joshua Ortiz-Guzman, Keith Cordiner, Peter Saggau, Andreas S. Tolias, Benjamin R. Arenkiel

publication / 2017
Spatial Organization of Chromatic Pathways in the Mouse Dorsal Lateral Geniculate Nucleus
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope

Daniel J. Denman, Joshua H. Siegle, Christof Koch, R. Clay Reid, Timothy J. Blanche

10.1523/jneurosci.1742-16.2016
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
publication / 2017
Scene-selective coding by single neurons in the human parahippocampal cortex
Proceedings of the National Academy of Sciences of the United States of America
Brain Science
MindScope

Florian Mormann, Simon Kornblith, Moran Cerf, Matias J. Ison, Alexander Kraskov, Michelle Tran, Simeon Knieling, Rodrigo Quian Quiroga, Christof Koch, Itzhak Fried

10.1073/pnas.1608159113
Brain Science
publication / 2017
Alterations of motor cortical microcircuit in a depressive-like mouse model produced by light deprivation
Neuroscience
Brain Science
MindScope

Yun-Feng Zhang, Qi-Qin Li, Jia Qu, Cui-Min Sun, Yun Wang

10.1016/j.neuroscience.2016.11.026
Brain Science
publication / 2017
Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
eLife
Brain Science
MindScope

Lucas T. Gray, Zizhen Yao, Thuc Nghi Nguyen, Tae Kyung Kim, Hongkui Zeng, Bosiljka Tasic

10.7554/elife.21883
AIBS First Author, AIBS Last Author, Brain Science
publication / 2017
An extended retinotopic map of mouse cortex
eLife
Brain Science
MindScope

Jun Zhuang, Lydia Ng, Derric Williams, Matthew Valley, Yang Li, Marina Garrett, Jack Waters

10.7554/elife.18372
Brain Science
publication / 2017
A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development
Cell Stem Cell
Brain Science
MindScope

Zizhen Yao, John K. Mich, Sherman Ku, Vilas Menon, Anne-Rachel Krostag, Refugio A. Martinez, Leon Furchtgott, Heather Mulholland, Susan Bort, Margaret A. Fuqua, Ben W. Gregor, Rebecca D. Hodge, Anu Jayabalu, Ryan C. May, Samuel Melton, Angelique M. Nelson, N. Kiet Ngo, Nadiya V. Shapovalova, Soraya I. Shehata, Michael W. Smith, Leah J. Tait, Carol L. Thompson, Elliot R. Thomsen, Chaoyang Ye, Ian A. Glass, Ajamete Kaykas, Shuyuan Yao, John W. Phillips, Joshua S. Grimley, Boaz P. Levi, Yanling Wang, Sharad Ramanathan

10.1016/j.stem.2016.09.011
AIBS First Author, AIBS Last Author, Brain Science
publication / 2017
A Computational Analysis of the Function of Three Inhibitory Cell Types in Contextual Visual Processing
Frontiers in Computational Neuroscience
Brain Science
MindScope

Jung H. Lee, Christof Koch, Stefan Mihalas

10.3389/fncom.2017.00028
AIBS First Author, AIBS Last Author, Brain Science, MindScope Program
publication / 2017
An R-CaMP1.07 reporter mouse for cell-type-specific expression of a sensitive red fluorescent calcium indicator
PloS One
Brain Science
MindScope

Philipp Bethge, Stefano Carta, Dayra A. Lorenzo, Ladan Egolf, Despoina Goniotaki, Linda Madisen, Fabian F. Voigt, Jerry L. Chen, Bernard Schneider, Masamichi Ohkura, Junichi Nakai, Hongkui Zeng, Adriano Aguzzi, Fritjof Helmchen

10.1371/journal.pone.0179460
Brain Science
publication / 2017
A protocol for manual segmentation of medial temporal lobe subregions in 7 Tesla MRI
NeuroImage. Clinical
Brain Science
MindScope

D. Berron, P. Vieweg, A. Hochkeppler, J. B. Pluta, S.-L. Ding, A. Maass, A. Luther, L. Xie, S. R. Das, D. A. Wolk, T. Wolbers, P. A. Yushkevich, E. Düzel, L. E. M. Wisse

publication / 2017
Are we underestimating the richness of visual experience?
Neuroscience of Consciousness
Brain Science
MindScope

Andrew M. Haun, Giulio Tononi, Christof Koch, Naotsugu Tsuchiya

10.1093/nc/niw023
Brain Science
publication / 2017
Automated identification of mouse visual areas with intrinsic signal imaging
Nature Protocols
Brain Science
MindScope

Ashley L. Juavinett, Ian Nauhaus, Marina E. Garrett, Jun Zhuang, Edward M. Callaway

10.1038/nprot.2016.158
Brain Science
publication / 2017
Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability
NeuroImage
Brain Science
MindScope

Long Xie, John B. Pluta, Sandhitsu R. Das, Laura E. M. Wisse, Hongzhi Wang, Lauren Mancuso, Dasha Kliot, Brian B. Avants, Song-Lin Ding, José V. Manjón, David A. Wolk, Paul A. Yushkevich

publication / 2017
N3DFix: an Algorithm for Automatic Removal of Swelling Artifacts in Neuronal Reconstructions
Neuroinformatics
Brain Science
MindScope

Eduardo Conde-Sousa, Peter Szücs, Hanchuan Peng, Paulo Aguiar

10.1007/s12021-016-9308-7
Brain Science
publication / 2017
PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Brain Science
MindScope

Brian Aevermann, Jamison McCorrison, Pratap Venepally, Rebecca Hodge, Trygve Bakken, Jeremy Miller, Mark Novotny, Danny N. Tran, Francisco Diezfuertes, Lena Christiansen, Fan Zhang, Frank Steemers, Roger S. Lasken, E. D. Lein, Nicholas Schork, Richard H. Scheuermann

10.1142/9789813207813_0052
Brain Science
publication / 2017
Teaching with Big Data: Report from the 2016 Society for Neuroscience Teaching Workshop
Journal of undergraduate neuroscience education: JUNE: a publication of FUN, Faculty for Undergraduate Neuroscience
Brain Science
MindScope

William Grisham, Joshua C. Brumberg, Terri Gilbert, Linda Lanyon, Robert W. Williams, Richard Olivo

publication / 2016
Long-Term Optical Access to an Estimated One Million Neurons in the Live Mouse Cortex
Cell Reports
Brain Science
MindScope

Tony Hyun Kim, Yanping Zhang, Jérôme Lecoq, Juergen C. Jung, Jane Li, Hongkui Zeng, Cristopher M. Niell, Mark J. Schnitzer

10.1016/j.celrep.2016.12.004
Brain Science
publication / 2016
A viral strategy for targeting and manipulating interneurons across vertebrate species
Nature Neuroscience
Brain Science
MindScope

Jordane Dimidschstein, Qian Chen, Robin Tremblay, Stephanie L. Rogers, Giuseppe-Antonio Saldi, Lihua Guo, Qing Xu, Runpeng Liu, Congyi Lu, Jianhua Chu, Joshua S. Grimley, Anne-Rachel Krostag, Ajamete Kaykas, Michael C. Avery, Mohammad S. Rashid, Myungin Baek, Amanda L. Jacob, Gordon B. Smith, Daniel E. Wilson, Georg Kosche, Illya Kruglikov, Tomasz Rusielewicz, Vibhakar C. Kotak, Todd M. Mowery, Stewart A. Anderson, Edward M. Callaway, Jeremy S. Dasen, David Fitzpatrick, Valentina Fossati, Michael A. Long, Scott Noggle, John H. Reynolds, Dan H. Sanes, Bernardo Rudy, Guoping Feng, Gord Fishell

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