Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search

publications

explore publications from the allen institute

latest publications

2026
2025
2024
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
Brain and Consciousness
Brain Science
Cell Science
Education
Immunology
Neural Dynamics
Seattle Hub Team
Shanahan Fellowship
Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
publication / 2021
Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
eLife
Brain Science
MindScope
Agata Budzillo
Kristen Hadley
Tim Jarsky
publication / 2021
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
Scientific Reports
Cell Science
This is some text inside of a div block.
publication / 2021
Injections of AAV Vectors for Optogenetics in Anesthetized and Awake Behaving Non-Human Primate Brain
Journal of Visualized Experiments: JoVE
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Clear optically matched panoramic access channel technique (COMPACT) for large-volume deep brain imaging
Nature Methods
No items found.
This is some text inside of a div block.
publication / 2021
Collicular circuits for flexible sensorimotor routing
Nature Neuroscience
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments
Nature Methods
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Perceptual awareness negativity: a physiological correlate of sensory consciousness
Trends in Cognitive Sciences
Brain Science
MindScope
Christof Koch
publication / 2021
Recent ultra-rare inherited variants implicate new autism candidate risk genes
Nature Genetics
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Interrogating theoretical models of neural computation with emergent property inference
eLife
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Remote control of neural function by X-ray-induced scintillation
Nature Communications
Neural Dynamics
This is some text inside of a div block.
publication / 2021
FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test
Briefings in Bioinformatics
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
eLife
Brain Science
MindScope
Shiella Caldejon
Séverine Durand
Jérôme Lecoq
publication / 2021
Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
Cell Systems
Cell Science
Aditya Nath
publication / 2021
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Cell
Brain Science
MindScope
Zizhen Yao
Jeff Goldy
Fahimeh Baftizadeh
publication / 2021
Cell segmentation-free inference of cell types from in situ transcriptomics data
Nature Communications
Brain Science
MindScope
Brian Long
Bosiljka Tasic
publication / 2021
Control of impulsivity by Gi-protein signalling in layer-5 pyramidal neurons of the anterior cingulate cortex
Communications Biology
Brain Science
MindScope
Bosiljka Tasic
Zizhen Yao
Hongkui Zeng
publication / 2021
Enhancer viruses for combinatorial cell-subclass-specific labeling
Neuron
Brain Science
MindScope
Tanya L. Daigle
Brian Kalmbach
Shenqin Yao
publication / 2021
Integration of evidence across human and model organism studies: A meeting report
Genes, Brain, and Behavior
Brain Science
MindScope
Michael Hawrylycz
Previous
load more publications

No results found, try reducing your search parameters.

we acceleratedevelopcatalyzeimpact

science done differently. shared with the world.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings