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publication / 2021
Isoform cell-type specificity in the mouse primary motor cortex
Nature
Brain Science
MindScope

A. Sina Booeshaghi, Zizhen Yao, Cindy van Velthoven, Kimberly Smith, Bosiljka Tasic, Hongkui Zeng, Lior Pachter

publication / 2021
Morphological diversity of single neurons in molecularly defined cell types
Nature
Brain Science
MindScope

Hanchuan Peng, Peng Xie, Lijuan Liu, Xiuli Kuang, Yimin Wang, Lei Qu, Hui Gong, Shengdian Jiang, Anan Li, Zongcai Ruan, Liya Ding, Zizhen Yao, Chao Chen, Mengya Chen, Tanya L. Daigle, Rachel Dalley, Zhangcan Ding, Yanjun Duan, Aaron Feiner, Ping He, Chris Hill, Karla E. Hirokawa, Guodong Hong, Lei Huang, Sara Kebede, Hsien-Chi Kuo, Rachael Larsen, Phil Lesnar, Longfei Li, Qi Li, Xiangning Li, Yaoyao Li, Yuanyuan Li, An Liu, Donghuan Lu, Stephanie Mok, Lydia Ng, Thuc Nghi Nguyen, Qiang Ouyang, Jintao Pan, Elise Shen, Yuanyuan Song, Susan M. Sunkin, Bosiljka Tasic, Matthew B. Veldman, Wayne Wakeman, Wan Wan, Peng Wang, Quanxin Wang, Tao Wang, Yaping Wang, Feng Xiong, Wei Xiong, Wenjie Xu, Min Ye, Lulu Yin, Yang Yu, Jia Yuan, Jing Yuan, Zhixi Yun, Shaoqun Zeng, Shichen Zhang, Sujun Zhao, Zijun Zhao, Zhi Zhou, Z. Josh Huang, Luke Esposito, Michael J. Hawrylycz, Staci A. Sorensen, X. William Yang, Yefeng Zheng, Zhongze Gu, Wei Xie, Christof Koch, Qingming Luo, Julie A. Harris, Yun Wang, Hongkui Zeng

publication / 2021
Phenotypic variation of transcriptomic cell types in mouse motor cortex
Nature
Brain Science
MindScope

Federico Scala, Dmitry Kobak, Matteo Bernabucci, Yves Bernaerts, Cathryn René Cadwell, Jesus Ramon Castro, Leonard Hartmanis, Xiaolong Jiang, Sophie Laturnus, Elanine Miranda, Shalaka Mulherkar, Zheng Huan Tan, Zizhen Yao, Hongkui Zeng, Rickard Sandberg, Philipp Berens, Andreas S. Tolias

publication / 2021
QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
Journal of Microscopy
Cell Science

Glyn Nelson, Ulrike Boehm, Steve Bagley, Peter Bajcsy, Johanna Bischof, Claire M. Brown, Aurélien Dauphin, Ian M. Dobbie, John E. Eriksson, Orestis Faklaris, Julia Fernandez-Rodriguez, Alexia Ferrand, Laurent Gelman, Ali Gheisari, Hella Hartmann, Christian Kukat, Alex Laude, Miso Mitkovski, Sebastian Munck, Alison J. North, Tobias M. Rasse, Ute Resch-Genger, Lucas C. Schuetz, Arne Seitz, Caterina Strambio-De-Castillia, Jason R. Swedlow, Ioannis Alexopoulos, Karin Aumayr, Sergiy Avilov, Gert-Jan Bakker, Rodrigo R. Bammann, Andrea Bassi, Hannes Beckert, Sebastian Beer, Yury Belyaev, Jakob Bierwagen, Konstantin A. Birngruber, Manel Bosch, Juergen Breitlow, Lisa A. Cameron, Joe Chalfoun, James J. Chambers, Chieh-Li Chen, Eduardo Conde-Sousa, Alexander D. Corbett, Fabrice P. Cordelieres, Elaine Del Nery, Ralf Dietzel, Frank Eismann, Elnaz Fazeli, Andreas Felscher, Hans Fried, Nathalie Gaudreault, Wah Ing Goh, Thomas Guilbert, Roland Hadleigh, Peter Hemmerich, Gerhard A. Holst, Michelle S. Itano, Claudia B. Jaffe, Helena K. Jambor, Stuart C. Jarvis, Antje Keppler, David Kirchenbuechler, Marcel Kirchner, Norio Kobayashi, Gabriel Krens, Susanne Kunis, Judith Lacoste, Marco Marcello, Gabriel G. Martins, Daniel J. Metcalf, Claire A. Mitchell, Joshua Moore, Tobias Mueller, Michael S. Nelson, Stephen Ogg, Shuichi Onami, Alexandra L. Palmer, Perrine Paul-Gilloteaux, Jaime A. Pimentel, Laure Plantard, Santosh Podder, Elton Rexhepaj, Arnaud Royon, Markku A. Saari, Damien Schapman, Vincent Schoonderwoert, Britta Schroth-Diez, Stanley Schwartz, Michael Shaw, Martin Spitaler, Martin T. Stoeckl, Damir Sudar, Jeremie Teillon, Stefan Terjung, Roland Thuenauer, Christian D. Wilms, Graham D. Wright, Roland Nitschke

publication / 2021
Spatially resolved cell atlas of the mouse primary motor cortex by MERFISH
Nature
Brain Science
MindScope

Meng Zhang, Stephen W. Eichhorn, Brian Zingg, Zizhen Yao, Kaelan Cotter, Hongkui Zeng, Hongwei Dong, Xiaowei Zhuang

publication / 2021
A mechanism for sarcomere breathing: volume change and advective flow within the myofilament lattice
Biophysical Journal
Cell Science

Julie A. Cass, C. David Williams, Thomas C. Irving, Eric Lauga, Sage Malingen, Thomas L. Daniel, Simon N. Sponberg

publication / 2021
Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons
Neuron
Brain Science
MindScope

Brian E. Kalmbach, Rebecca D. Hodge, Nikolas L. Jorstad, Scott Owen, Rebecca de Frates, Anna Marie Yanny, Rachel Dalley, Matt Mallory, Lucas T. Graybuck, Cristina Radaelli, C. Dirk Keene, Ryder P. Gwinn, Daniel L. Silbergeld, Charles Cobbs, Jeffrey G. Ojemann, Andrew L. Ko, Anoop P. Patel, Richard G. Ellenbogen, Trygve E. Bakken, Tanya L. Daigle, Nick Dee, Brian R. Lee, Medea McGraw, Philip R. Nicovich, Kimberly Smith, Staci A. Sorensen, Bosiljka Tasic, Hongkui Zeng, Christof Koch, Ed S. Lein, Jonathan T. Ting

publication / 2021
Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
eLife
Brain Science
MindScope

Trygve E. Bakken, Cindy Tj van Velthoven, Vilas Menon, Rebecca D. Hodge, Zizhen Yao, Thuc Nghi Nguyen, Lucas T. Graybuck, Gregory D. Horwitz, Darren Bertagnolli, Jeff Goldy, Anna Marie Yanny, Emma Garren, Sheana Parry, Tamara Casper, Soraya I. Shehata, Eliza R. Barkan, Aaron Szafer, Boaz P. Levi, Nick Dee, Kimberly A. Smith, Susan M. Sunkin, Amy Bernard, John Phillips, Michael J. Hawrylycz, Christof Koch, Gabe J. Murphy, Ed Lein, Hongkui Zeng, Bosiljka Tasic

publication / 2021
Adaptation supports short-term memory in a visual change detection task
PLoS computational biology
Brain Science
MindScope

Brian Hu, Marina E. Garrett, Peter A. Groblewski, Douglas R. Ollerenshaw, Jiaqi Shang, Kate Roll, Sahar Manavi, Christof Koch, Shawn R. Olsen, Stefan Mihalas

publication / 2021
Autoencoder networks extract latent variables and encode these variables in their connectomes
Neural Networks: The Official Journal of the International Neural Network Society
Brain Science
MindScope

Matthew Farrell, Stefano Recanatesi, R. Clay Reid, Stefan Mihalas, Eric Shea-Brown

publication / 2021
Comprehensive in situ mapping of human cortical transcriptomic cell types
Communications Biology
Brain Science
MindScope

Christoffer Mattsson Langseth, Daniel Gyllborg, Jeremy A. Miller, Jennie L. Close, Brian Long, Ed S. Lein, Markus M. Hilscher, Mats Nilsson

publication / 2021
Tetra-gel enables superior accuracy in combined super-resolution imaging and expansion microscopy
Scientific Reports
No items found.

Hsuan Lee, Chih-Chieh Yu, Edward S. Boyden, Xiaowei Zhuang, Pallav Kosuri

publication / 2021
Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
eLife
Brain Science
MindScope

Brian R. Lee, Agata Budzillo, Kristen Hadley, Jeremy A. Miller, Tim Jarsky, Katherine Baker, DiJon Hill, Lisa Kim, Rusty Mann, Lindsay Ng, Aaron Oldre, Ram Rajanbabu, Jessica Trinh, Sara Vargas, Thomas Braun, Rachel A. Dalley, Nathan W. Gouwens, Brian E. Kalmbach, Tae Kyung Kim, Kimberly A. Smith, Gilberto Soler-Llavina, Staci Sorensen, Bosiljka Tasic, Jonathan T. Ting, Ed Lein, Hongkui Zeng, Gabe J. Murphy, Jim Berg

publication / 2021
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
Scientific Reports
Cell Science

Tanya Grancharova, Kaytlyn A. Gerbin, Alexander B. Rosenberg, Charles M. Roco, Joy E. Arakaki, Colette M. DeLizo, Stephanie Q. Dinh, Rory M. Donovan-Maiye, Matthew Hirano, Angelique M. Nelson, Joyce Tang, Julie A. Theriot, Calysta Yan, Vilas Menon, Sean P. Palecek, Georg Seelig, Ruwanthi N. Gunawardane

publication / 2021
Injections of AAV Vectors for Optogenetics in Anesthetized and Awake Behaving Non-Human Primate Brain
Journal of Visualized Experiments: JoVE
Brain Science
MindScope

Yoshiko Kojima, Jonathan T. Ting, Robijanto Soetedjo, Shane D. Gibson, Gregory D. Horwitz

publication / 2021
Clear optically matched panoramic access channel technique (COMPACT) for large-volume deep brain imaging
Nature Methods
No items found.

Bowen Wei, Chenmao Wang, Zongyue Cheng, Baoling Lai, Wen-Biao Gan, Meng Cui

publication / 2021
Collicular circuits for flexible sensorimotor routing
Nature Neuroscience
Brain Science
MindScope

Chunyu A. Duan, Marino Pagan, Alex T. Piet, Charles D. Kopec, Athena Akrami, Alexander J. Riordan, Jeffrey C. Erlich, Carlos D. Brody

publication / 2021
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments
Nature Methods
Brain Science
MindScope

Elliot A. Hershberg, Conor K. Camplisson, Jennie L. Close, Sahar Attar, Ryan Chern, Yuzhen Liu, Shreeram Akilesh, Philip R. Nicovich, Brian J. Beliveau

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