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publication / 2021
Scaled, high fidelity electrophysiological, morphological, and transcriptomic cell characterization
eLife
Brain Science
MindScope

Brian R. Lee, Agata Budzillo, Kristen Hadley, Jeremy A. Miller, Tim Jarsky, Katherine Baker, DiJon Hill, Lisa Kim, Rusty Mann, Lindsay Ng, Aaron Oldre, Ram Rajanbabu, Jessica Trinh, Sara Vargas, Thomas Braun, Rachel A. Dalley, Nathan W. Gouwens, Brian E. Kalmbach, Tae Kyung Kim, Kimberly A. Smith, Gilberto Soler-Llavina, Staci Sorensen, Bosiljka Tasic, Jonathan T. Ting, Ed Lein, Hongkui Zeng, Gabe J. Murphy, Jim Berg

publication / 2021
A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes
Scientific Reports
Cell Science

Tanya Grancharova, Kaytlyn A. Gerbin, Alexander B. Rosenberg, Charles M. Roco, Joy E. Arakaki, Colette M. DeLizo, Stephanie Q. Dinh, Rory M. Donovan-Maiye, Matthew Hirano, Angelique M. Nelson, Joyce Tang, Julie A. Theriot, Calysta Yan, Vilas Menon, Sean P. Palecek, Georg Seelig, Ruwanthi N. Gunawardane

publication / 2021
Injections of AAV Vectors for Optogenetics in Anesthetized and Awake Behaving Non-Human Primate Brain
Journal of Visualized Experiments: JoVE
Brain Science
MindScope

Yoshiko Kojima, Jonathan T. Ting, Robijanto Soetedjo, Shane D. Gibson, Gregory D. Horwitz

publication / 2021
Clear optically matched panoramic access channel technique (COMPACT) for large-volume deep brain imaging
Nature Methods
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Bowen Wei, Chenmao Wang, Zongyue Cheng, Baoling Lai, Wen-Biao Gan, Meng Cui

publication / 2021
Collicular circuits for flexible sensorimotor routing
Nature Neuroscience
Brain Science
MindScope

Chunyu A. Duan, Marino Pagan, Alex T. Piet, Charles D. Kopec, Athena Akrami, Alexander J. Riordan, Jeffrey C. Erlich, Carlos D. Brody

publication / 2021
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments
Nature Methods
Brain Science
MindScope

Elliot A. Hershberg, Conor K. Camplisson, Jennie L. Close, Sahar Attar, Ryan Chern, Yuzhen Liu, Shreeram Akilesh, Philip R. Nicovich, Brian J. Beliveau

publication / 2021
Perceptual awareness negativity: a physiological correlate of sensory consciousness
Trends in Cognitive Sciences
Brain Science
MindScope

Cole Dembski, Christof Koch, Michael Pitts

publication / 2021
Recent ultra-rare inherited variants implicate new autism candidate risk genes
Nature Genetics
Brain Science
MindScope

Amy B. Wilfert, Tychele N. Turner, Shwetha C. Murali, PingHsun Hsieh, Arvis Sulovari, Tianyun Wang, Bradley P. Coe, Hui Guo, Kendra Hoekzema, Trygve E. Bakken, Lara H. Winterkorn, Uday S. Evani, Marta Byrska-Bishop, Rachel K. Earl, Raphael A. Bernier, SPARK Consortium, Michael C. Zody, Evan E. Eichler

publication / 2021
Interrogating theoretical models of neural computation with emergent property inference
eLife
Brain Science
MindScope

Sean R. Bittner, Agostina Palmigiano, Alex T. Piet, Chunyu A. Duan, Carlos D. Brody, Kenneth D. Miller, John Cunningham

publication / 2021
Remote control of neural function by X-ray-induced scintillation
Nature Communications
Neural Dynamics

Takanori Matsubara, Takayuki Yanagida, Noriaki Kawaguchi, Takashi Nakano, Junichiro Yoshimoto, Maiko Sezaki, Hitoshi Takizawa, Satoshi P. Tsunoda, Shin-ichiro Horigane, Shuhei Ueda, Sayaka Takemoto-Kimura, Hideki Kandori, Akihiro Yamanaka, Takayuki Yamashita

publication / 2021
FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman-Rafsky non-parametric test
Briefings in Bioinformatics
Brain Science
MindScope

Yun Zhang, Brian D. Aevermann, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, Ed S. Lein, Richard H. Scheuermann

publication / 2021
Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
eLife
Brain Science
MindScope

Joshua H. Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel J. Millman, Gabriel K. Ocker, Shiella Caldejon, Linzy Casal, Andy Cho, Daniel J. Denman, Séverine Durand, Peter A. Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jérôme Lecoq, Chelsea Nayan, Kiet Ngo, Philip R. Nicovich, Kat North, Tamina K. Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R. Olsen, Christof Koch, Michael A. Buice, Saskia Ej de Vries

publication / 2021
Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes
Cell Systems
Cell Science

Kaytlyn A. Gerbin, Tanya Grancharova, Rory M. Donovan-Maiye, Melissa C. Hendershott, Helen G. Anderson, Jackson M. Brown, Jianxu Chen, Stephanie Q. Dinh, Jamie L. Gehring, Gregory R. Johnson, HyeonWoo Lee, Aditya Nath, Angelique M. Nelson, M. Filip Sluzewski, Matheus P. Viana, Calysta Yan, Rebecca J. Zaunbrecher, Kimberly R. Cordes Metzler, Nathalie Gaudreault, Theo A. Knijnenburg, Susanne M. Rafelski, Julie A. Theriot, Ruwanthi N. Gunawardane

publication / 2021
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Cell
Brain Science
MindScope

Zizhen Yao, Cindy T. J. van Velthoven, Thuc Nghi Nguyen, Jeff Goldy, Adriana E. Sedeno-Cortes, Fahimeh Baftizadeh, Darren Bertagnolli, Tamara Casper, Megan Chiang, Kirsten Crichton, Song-Lin Ding, Olivia Fong, Emma Garren, Alexandra Glandon, Nathan W. Gouwens, James Gray, Lucas T. Graybuck, Michael J. Hawrylycz, Daniel Hirschstein, Matthew Kroll, Kanan Lathia, Changkyu Lee, Boaz Levi, Delissa McMillen, Stephanie Mok, Thanh Pham, Qingzhong Ren, Christine Rimorin, Nadiya Shapovalova, Josef Sulc, Susan M. Sunkin, Michael Tieu, Amy Torkelson, Herman Tung, Katelyn Ward, Nick Dee, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng

publication / 2021
Cell segmentation-free inference of cell types from in situ transcriptomics data
Nature Communications
Brain Science
MindScope

Jeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, Brian Long, Lars E. Borm, Emma Garren, Thuc Nghi Nguyen, Bosiljka Tasic, Simone Codeluppi, Tobias Graf, Matthias Schlesner, Oliver Stegle, Roland Eils, Naveed Ishaque

publication / 2021
Control of impulsivity by Gi-protein signalling in layer-5 pyramidal neurons of the anterior cingulate cortex
Communications Biology
Brain Science
MindScope

Bastiaan van der Veen, Sampath K. T. Kapanaiah, Kasyoka Kilonzo, Peter Steele-Perkins, Martin M. Jendryka, Stefanie Schulz, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Thomas Akam, Janet R. Nicholson, Birgit Liss, Wiebke Nissen, Anton Pekcec, Dennis Kätzel

publication / 2021
Enhancer viruses for combinatorial cell-subclass-specific labeling
Neuron
Brain Science
MindScope

Lucas T. Graybuck, Tanya L. Daigle, Adriana E. Sedeño-Cortés, Miranda Walker, Brian Kalmbach, Garreck H. Lenz, Elyse Morin, Thuc Nghi Nguyen, Emma Garren, Jacqueline L. Bendrick, Tae Kyung Kim, Thomas Zhou, Marty Mortrud, Shenqin Yao, La' Akea Siverts, Rachael Larsen, Bryan B. Gore, Eric R. Szelenyi, Cameron Trader, Pooja Balaram, Cindy T. J. van Velthoven, Megan Chiang, John K. Mich, Nick Dee, Jeff Goldy, Ali H. Cetin, Kimberly Smith, Sharon W. Way, Luke Esposito, Zizhen Yao, Viviana Gradinaru, Susan M. Sunkin, Ed Lein, Boaz P. Levi, Jonathan T. Ting, Hongkui Zeng, Bosiljka Tasic

publication / 2021
Integration of evidence across human and model organism studies: A meeting report
Genes, Brain, and Behavior
Brain Science
MindScope

Rohan H. C. Palmer, Emma C. Johnson, Hyejung Won, Renato Polimanti, Manav Kapoor, Apurva Chitre, Molly A. Bogue, Chelsie E. Benca-Bachman, Clarissa C. Parker, Anurag Verma, Timothy Reynolds, Jason Ernst, Michael Bray, Soo Bin Kwon, Dongbing Lai, Bryan C. Quach, Nathan C. Gaddis, Laura Saba, Hao Chen, Michael Hawrylycz, Shan Zhang, Yuan Zhou, Spencer Mahaffey, Christian Fischer, Sandra Sanchez-Roige, Anita Bandrowski, Qing Lu, Li Shen, Vivek Philip, Joel Gelernter, Laura J. Bierut, Dana B. Hancock, Howard J. Edenberg, Eric O. Johnson, Eric J. Nestler, Peter B. Barr, Pjotr Prins, Desmond J. Smith, Schahram Akbarian, Thorgeir Thorgeirsson, Dave Walton, Erich Baker, Daniel Jacobson, Abraham A. Palmer, Michael Miles, Elissa J. Chesler, Jake Emerson, Arpana Agrawal, Maryann Martone, Robert W. Williams

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