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Brian Kalmbach

Investigator, Assistant

teams /
Allenite

Brian joined the Allen Institute in 2016 as a scientist in the Human Cell Types research program. Before coming to the Allen Institute, Brian worked in the laboratory of Dan Johnston at the University of Texas at Austin as a postdoctoral fellow and research scientist. He performed patch clamp recordings from the dendrite and soma to study differences in the function of subpopulations of L5 neurons in prefrontal cortex. His work also focused on how neuron function is altered in a mouse model of Fragile X syndrome, the most common form of inherited mental impairment and the leading identified cause of autism. Brian completed his PhD in neuroscience at the University of Texas Medical School in Houston in the laboratory of Mike Mauk. There he studied interactions between prefrontal cortex and cerebellum during a form of associative learning, trace eyelid conditioning. Brian obtained Bachelor’s and Master’s degrees in psychology at Western Washington University.

research focus

The brain contains a seemingly endless number of neuron types, yet all neurons perform a similar transformation of synaptic input arriving at the dendrite into action potentials initiated at the axon. The details of this transformation vary across cell types and are crucial in determining the function of a given neuron in its circuit. I use patch-clamp recordings from the soma and dendrite to investigate how the unique morphology, synaptic and intrinsic properties of different cell types shape a neuron’s input/output transformation. In collaboration with Seattle area neurosurgeons, I am participating in a project at the Allen Institute to extend this analysis to human cerebral cortex. Our goal is to use a combined analysis of gene expression, physiology and morphology to create a comprehensive taxonomy of cell types in human temporal cortex.

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New insights about evolution of human brain region that controls voluntary movement, including rare, large neurons vulnerable in ALS
Is our brain like that of a mouse or a monkey? New study aims to find our cellular similarities - and key differences

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featured publications

publication / 2025
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
Cell
publication / 2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience
publication / 2024
Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues
eLife
publication / 2023
Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex
Science (New York, N.Y.)
publication / 2023
Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
Science (New York, N.Y.)
publication / 2022
Multi-modal characterization and simulation of human epileptic circuitry
Cell Reports
publication / 2022
Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types
Cell Reports
publication / 2021
A multimodal cell census and atlas of the mammalian primary motor cortex
Nature
publication / 2021
Human neocortical expansion involves glutamatergic neuron diversification
Nature
publication / 2021
Enhancer viruses for combinatorial cell-subclass-specific labeling
Neuron
publication / 2018
Specialized Subpopulations of Deep-Layer Pyramidal Neurons in the Neocortex: Bridging Cellular Properties to Functional Consequences
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
publication / 2018
A robust ex vivo experimental platform for molecular-genetic dissection of adult human neocortical cell types and circuits
Scientific Reports
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