
Bio:
Song-Lin Ding joined the Allen Institute in 2010 as a chief neuroanatomist to create reference atlases for the developing and adult human brains. He also generates brain ontology and defines laser microdissection sampling areas for human and macaque brain structures in various stages of development. Ding has over 23 years of experience in neuroanatomy. Prior to joining the Allen Institute, Ding served as a research scientist at the University of Iowa and a Research Assistant Professor at the University of Rochester. In both places, he focused on anatomical organization of adult human and macaque brains. At the University of Iowa he also helped characterize a mouse model for Batten Disease. Prior to this work, Ding was an Associate Professor at the Institute of Neuroscience, Guangzhou Medical College, China where he investigated the development of human visual and hippocampal cortices. His research interests mainly cover connectional, chemical, developmental and comparative aspects of the visual and limbic systems. His postdoctoral work at the Center for Neuroscience at the University of Tennessee, Memphis focused on the development and chemical natures of the corpus callosum connections in the rat and cat visual cortex. Ding received a M.D. from Hunan Medical University in China. He is also a Guest Professor at the Institute of Neuroscience, Guangzhou Medical College, China.
Research Focus:
Understanding detailed brain organization – including its cell types, chemical/molecular nature, connections and parcellations – is an essential step to revealing the mechanisms underlying different brain functions and related diseases. As a neuroanatomist, I am interested in generating anatomical and molecular atlases for the developing and adult human and macaque brains. We use these atlases to guide our large-scale laser microdissection efforts at the Allen Institute. To create precise and detailed human brain reference atlases I use a combination of cellular and molecular markers in multiple cell types to identify the chemical characterization, molecular signature, and unique developmental changes of each target brain structure. So far we have created the first version of digital reference atlases for one adult and two prenatal human brains. Our ongoing effort is to generate reference atlases with more detailed parcellation of the entire human brain by adding fine cortical and subcortical subdivisions. Anatomical and molecular atlases of developing macaque brains provide exemplary models where there is very limited availability of human brains in various stages of development. To collect large-scale microarray data on macaque brain development we are now trying to define all layers of the visual, somatosensory and anterior cingulate cortices as well as subdivisions of the hippocampal formation, amygdala and basal ganglia at six stages of prenatal development. This dataset, together with the microarray data from prenatal human brains, will significantly fuel our understanding of human brain development and related disease. One of my future goals is to explore comparative neuroanatomy of human, monkey and rodent brains with emphasis on the visual and limbic structures. I aim to compare cell types and their molecular characterization, wiring circuits and developmental changes in different species in order to gain information on similarities and differences among these species. In addition, searching for mouse cortical homologues of human and macaque brains using molecular and connectional neuroanatomy would greatly facilitate the interactive use of the huge datasets created at the Allen Institute for mouse, macaque and human brains.Publications
Nature Neuroscience
Integrated multimodal cell atlas of Alzheimer's disease
Oct 14, 2024
Mariano I. Gabitto, Kyle J. Travaglini, Victoria M. Rachleff, Eitan S. Kaplan, Brian Long, Jeanelle Ariza, Yi Ding, Joseph T. Mahoney, Nick Dee, Jeff Goldy, Erica J. Melief, Anamika Agrawal, Omar Kana, Xingjian Zhen, Samuel T. Barlow, Krissy Brouner, Jazmin Campos, John Campos, Ambrose J. Carr, Tamara Casper, Rushil Chakrabarty, Michael Clark, Jonah Cool, Rachel Dalley, Martin Darvas, Song-Lin Ding, Tim Dolbeare, Tom Egdorf, Luke Esposito, Rebecca Ferrer, Lynn E. Fleckenstein, Rohan Gala, Amanda Gary, Emily Gelfand, Jessica Gloe, Nathan Guilford, Junitta Guzman, Daniel Hirschstein, Windy Ho, Madison Hupp, Tim Jarsky, Nelson Johansen, Brian E. Kalmbach, Lisa M. Keene, Sarah Khawand, Mitchell D. Kilgore, Amanda Kirkland, Michael Kunst, Brian R. Lee, Mckaila Leytze, Christine L. Mac Donald, Jocelin Malone, Zoe Maltzer, Naomi Martin, Rachel McCue, Delissa McMillen, Gonzalo Mena, Emma Meyerdierks, Kelly P. Meyers, Tyler Mollenkopf, Mark Montine, Amber L. Nolan, Julie K. Nyhus, Paul A. Olsen, Maiya Pacleb, Chelsea M. Pagan, Nicholas Peña, Trangthanh Pham, Christina Alice Pom, Nadia Postupna, Christine Rimorin, Augustin Ruiz, Giuseppe A. Saldi, Aimee M. Schantz, Nadiya V. Shapovalova, Staci A. Sorensen, Brian Staats, Matt Sullivan, Susan M. Sunkin, Carol Thompson, Michael Tieu, Jonathan T. Ting, Amy Torkelson, Tracy Tran, Nasmil J. Valera Cuevas, Sarah Walling-Bell, Ming-Qiang Wang, Jack Waters, Angela M. Wilson, Ming Xiao, David Haynor, Nicole M. Gatto, Suman Jayadev, Shoaib Mufti, Lydia Ng, Shubhabrata Mukherjee, Paul K. Crane, Caitlin S. Latimer, Boaz P. Levi, Kimberly A. Smith, Jennie L. Close, Jeremy A. Miller, Rebecca D. Hodge, Eric B. Larson, Thomas J. Grabowski, Michael Hawrylycz, C. Dirk Keene, Ed S. Lein
Read MoreBrain Sciences
Lamination, Borders, and Thalamic Projections of the Primary Visual Cortex in Human, Non-Human Primate, and Rodent Brains
Apr 11, 2024
Song-Lin Ding
Read MoreHippocampus
Comparison of histological delineations of medial temporal lobe cortices by four independent neuroanatomy laboratories
Feb 28, 2024
Anika Wuestefeld, Hannah Baumeister, Jenna N. Adams, Robin de Flores, Carl J. Hodgetts, Negar Mazloum-Farzaghi, Rosanna K. Olsen, Vyash Puliyadi, Tammy T. Tran, Arnold Bakker, Kelsey L. Canada, Marshall A. Dalton, Ana M. Daugherty, Renaud La Joie, Lei Wang, Madigan L. Bedard, Esther Buendia, Eunice Chung, Amanda Denning, María Del Mar Arroyo-Jiménez, Emilio Artacho-Pérula, David J. Irwin, Ranjit Ittyerah, Edward B. Lee, Sydney Lim, María Del Pilar Marcos-Rabal, Maria Mercedes Iñiguez de Onzoño Martin, Monica Munoz Lopez, Carlos de la Rosa Prieto, Theresa Schuck, Winifred Trotman, Alicia Vela, Paul Yushkevich, Katrin Amunts, Jean C. Augustinack, Song-Lin Ding, Ricardo Insausti, Olga Kedo, David Berron, Laura E. M. Wisse
Read MoreFrontiers in Neuroanatomy
Editorial: 15 years of frontiers in neuroanatomy: the circuits behind the visual cortex
Jan 01, 2024
Toru Takahata, Song-Lin Ding
Read MoreFrontiers in Neural Circuits
Comparison of the connectivity of the posterior intralaminar thalamic nucleus and peripeduncular nucleus in rats and mice
Jan 01, 2024
Hui-Ru Cai, Sheng-Qiang Chen, Xiao-Jun Xiang, Xue-Qin Zhang, Run-Zhe Ma, Ge Zhu, Song-Lin Ding
Read MoreScience (New York, N.Y.)
Transcriptomic diversity of cell types across the adult human brain
Oct 13, 2023
Kimberly Siletti, Rebecca Hodge, Alejandro Mossi Albiach, Ka Wai Lee, Song-Lin Ding, Lijuan Hu, Peter Lönnerberg, Trygve Bakken, Tamara Casper, Michael Clark, Nick Dee, Jessica Gloe, Daniel Hirschstein, Nadiya V. Shapovalova, C. Dirk Keene, Julie Nyhus, Herman Tung, Anna Marie Yanny, Ernest Arenas, Ed S. Lein, Sten Linnarsson
Read MoreScience (New York, N.Y.)
Single-cell DNA methylation and 3D genome architecture in the human brain
Oct 13, 2023
Wei Tian, Jingtian Zhou, Anna Bartlett, Qiurui Zeng, Hanqing Liu, Rosa G. Castanon, Mia Kenworthy, Jordan Altshul, Cynthia Valadon, Andrew Aldridge, Joseph R. Nery, Huaming Chen, Jiaying Xu, Nicholas D. Johnson, Jacinta Lucero, Julia K. Osteen, Nora Emerson, Jon Rink, Jasper Lee, Yang E. Li, Kimberly Siletti, Michelle Liem, Naomi Claffey, Carolyn O'Connor, Anna Marie Yanny, Julie Nyhus, Nick Dee, Tamara Casper, Nadiya Shapovalova, Daniel Hirschstein, Song-Lin Ding, Rebecca Hodge, Boaz P. Levi, C. Dirk Keene, Sten Linnarsson, Ed Lein, Bing Ren, M. Margarita Behrens, Joseph R. Ecker
Read MoreScience (New York, N.Y.)
Transcriptomic cytoarchitecture reveals principles of human neocortex organization
Oct 13, 2023
Nikolas L. Jorstad, Jennie Close, Nelson Johansen, Anna Marie Yanny, Eliza R. Barkan, Kyle J. Travaglini, Darren Bertagnolli, Jazmin Campos, Tamara Casper, Kirsten Crichton, Nick Dee, Song-Lin Ding, Emily Gelfand, Jeff Goldy, Daniel Hirschstein, Katelyn Kiick, Matthew Kroll, Michael Kunst, Kanan Lathia, Brian Long, Naomi Martin, Delissa McMillen, Trangthanh Pham, Christine Rimorin, Augustin Ruiz, Nadiya Shapovalova, Soraya Shehata, Kimberly Siletti, Saroja Somasundaram, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Edward M. Callaway, Patrick R. Hof, C. Dirk Keene, Boaz P. Levi, Sten Linnarsson, Partha P. Mitra, Kimberly Smith, Rebecca D. Hodge, Trygve E. Bakken, Ed S. Lein
Read MoreScience (New York, N.Y.)
Comparative transcriptomics reveals human-specific cortical features
Oct 13, 2023
Nikolas L. Jorstad, Janet H. T. Song, David Exposito-Alonso, Hamsini Suresh, Nathan Castro-Pacheco, Fenna M. Krienen, Anna Marie Yanny, Jennie Close, Emily Gelfand, Brian Long, Stephanie C. Seeman, Kyle J. Travaglini, Soumyadeep Basu, Marc Beaudin, Darren Bertagnolli, Megan Crow, Song-Lin Ding, Jeroen Eggermont, Alexandra Glandon, Jeff Goldy, Katelyn Kiick, Thomas Kroes, Delissa McMillen, Trangthanh Pham, Christine Rimorin, Kimberly Siletti, Saroja Somasundaram, Michael Tieu, Amy Torkelson, Guoping Feng, William D. Hopkins, Thomas Höllt, C. Dirk Keene, Sten Linnarsson, Steven A. McCarroll, Boudewijn P. Lelieveldt, Chet C. Sherwood, Kimberly Smith, Christopher A. Walsh, Alexander Dobin, Jesse Gillis, Ed S. Lein, Rebecca D. Hodge, Trygve E. Bakken
Read MorePLoS biology
A guide to the BRAIN Initiative Cell Census Network data ecosystem
Jun 01, 2023
Michael Hawrylycz, Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong-Wei Dong, Satrajit S. Ghosh, Jesse Gillis, Ronna Hertzano, David R. Haynor, Patrick R. Hof, Yongsoo Kim, Ed Lein, Yufeng Liu, Jeremy A. Miller, Partha P. Mitra, Eran Mukamel, Lydia Ng, David Osumi-Sutherland, Hanchuan Peng, Patrick L. Ray, Raymond Sanchez, Aviv Regev, Alex Ropelewski, Richard H. Scheuermann, Shawn Zheng Kai Tan, Carol L. Thompson, Timothy Tickle, Hagen Tilgner, Merina Varghese, Brock Wester, Owen White, Hongkui Zeng, Brian Aevermann, David Allemang, Seth Ament, Thomas L. Athey, Cody Baker, Katherine S. Baker, Pamela M. Baker, Anita Bandrowski, Samik Banerjee, Prajal Bishwakarma, Ambrose Carr, Min Chen, Roni Choudhury, Jonah Cool, Heather Creasy, Florence D'Orazi, Kylee Degatano, Benjamin Dichter, Song-Lin Ding, Tim Dolbeare, Joseph R. Ecker, Rongxin Fang, Jean-Christophe Fillion-Robin, Timothy P. Fliss, James Gee, Tom Gillespie, Nathan Gouwens, Guo-Qiang Zhang, Yaroslav O. Halchenko, Nomi L. Harris, Brian R. Herb, Houri Hintiryan, Gregory Hood, Sam Horvath, Bingxing Huo, Dorota Jarecka, Shengdian Jiang, Farzaneh Khajouei, Elizabeth A. Kiernan, Huseyin Kir, Lauren Kruse, Changkyu Lee, Boudewijn Lelieveldt, Yang Li, Hanqing Liu, Lijuan Liu, Anup Markuhar, James Mathews, Kaylee L. Mathews, Chris Mezias, Michael I. Miller, Tyler Mollenkopf, Shoaib Mufti, Christopher J. Mungall, Joshua Orvis, Maja A. Puchades, Lei Qu, Joseph P. Receveur, Bing Ren, Nathan Sjoquist, Brian Staats, Daniel Tward, Cindy T. J. van Velthoven, Quanxin Wang, Fangming Xie, Hua Xu, Zizhen Yao, Zhixi Yun, Yun Renee Zhang, W. Jim Zheng, Brian Zingg
Read MoreFrontiers in Neuroscience
Possible rodent equivalent of the posterior cingulate cortex (area 23) interconnects with multimodal cortical and subcortical regions
Jan 01, 2023
Xiao-Jun Xiang, Sheng-Qiang Chen, Xue-Qin Zhang, Chang-Hui Chen, Shun-Yu Zhang, Hui-Ru Cai, Song-Lin Ding
Read MoreThe Journal of Comparative Neurology
A novel subdivision of the bed nucleus of stria terminalis in monkey, rat, and mouse brains
Dec 30, 2022
Song-Lin Ding
Read MoreThe Journal of Comparative Neurology
Chemoarchitecture of area prostriata in adult and developing mice: Comparison with presubiculum and parasubiculum
Oct 01, 2022
Sheng-Qiang Chen, Chang-Hui Chen, Xiao-Jun Xiang, Shun-Yu Zhang, Song-Lin Ding
Read MoreFrontiers in Behavioral Neuroscience
The effects of bilateral prostriata lesions on spatial learning and memory in the rat
Jan 01, 2022
Shun-Yu Zhang, Sheng-Qiang Chen, Jin-Yuan Zhang, Chang-Hui Chen, Xiao-Jun Xiang, Hui-Ru Cai, Song-Lin Ding
Read MoreThe Journal of Comparative Neurology
Cellular resolution anatomical and molecular atlases for prenatal human brains
Jan 01, 2022
Song-Lin Ding, Joshua J. Royall, Phil Lesnar, Benjamin A. C. Facer, Kimberly A. Smith, Yina Wei, Kristina Brouner, Rachel A. Dalley, Nick Dee, Tim A. Dolbeare, Amanda Ebbert, Ian A. Glass, Nika H. Keller, Felix Lee, Tracy A. Lemon, Julie Nyhus, Julie Pendergraft, Robert Reid, Melaine Sarreal, Nadiya V. Shapovalova, Aaron Szafer, John W. Phillips, Susan M. Sunkin, John G. Hohmann, Allan R. Jones, Michael J. Hawrylycz, Patrick R. Hof, Lydia Ng, Amy Bernard, Ed S. Lein
Read MoreNature Cell Biology
Anatomical structures, cell types and biomarkers of the Human Reference Atlas
Nov 01, 2021
Katy Börner, Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland, Bruce W. Herr, Andreas Bueckle, Hrishikesh Paul, Muzlifah Haniffa, Laura Jardine, Amy Bernard, Song-Lin Ding, Jeremy A. Miller, Shin Lin, Marc K. Halushka, Avinash Boppana, Teri A. Longacre, John Hickey, Yiing Lin, M. Todd Valerius, Yongqun He, Gloria Pryhuber, Xin Sun, Marda Jorgensen, Andrea J. Radtke, Clive Wasserfall, Fiona Ginty, Jonhan Ho, Joel Sunshine, Rebecca T. Beuschel, Maigan Brusko, Sujin Lee, Rajeev Malhotra, Sanjay Jain, Griffin Weber
Read MoreNature
A multimodal cell census and atlas of the mammalian primary motor cortex
Oct 01, 2021
BRAIN Initiative Cell Census Network (BICCN)
Read MoreNature
Human neocortical expansion involves glutamatergic neuron diversification
Oct 01, 2021
Jim Berg, Staci A. Sorensen, Jonathan T. Ting, Jeremy A. Miller, Thomas Chartrand, Anatoly Buchin, Trygve E. Bakken, Agata Budzillo, Nick Dee, Song-Lin Ding, Nathan W. Gouwens, Rebecca D. Hodge, Brian Kalmbach, Changkyu Lee, Brian R. Lee, Lauren Alfiler, Katherine Baker, Eliza Barkan, Allison Beller, Kyla Berry, Darren Bertagnolli, Kris Bickley, Jasmine Bomben, Thomas Braun, Krissy Brouner, Tamara Casper, Peter Chong, Kirsten Crichton, Rachel Dalley, Rebecca de Frates, Tsega Desta, Samuel Dingman Lee, Florence D'Orazi, Nadezhda Dotson, Tom Egdorf, Rachel Enstrom, Colin Farrell, David Feng, Olivia Fong, Szabina Furdan, Anna A. Galakhova, Clare Gamlin, Amanda Gary, Alexandra Glandon, Jeff Goldy, Melissa Gorham, Natalia A. Goriounova, Sergey Gratiy, Lucas Graybuck, Hong Gu, Kristen Hadley, Nathan Hansen, Tim S. Heistek, Alex M. Henry, Djai B. Heyer, DiJon Hill, Chris Hill, Madie Hupp, Tim Jarsky, Sara Kebede, Lisa Keene, Lisa Kim, Mean-Hwan Kim, Matthew Kroll, Caitlin Latimer, Boaz P. Levi, Katherine E. Link, Matthew Mallory, Rusty Mann, Desiree Marshall, Michelle Maxwell, Medea McGraw, Delissa McMillen, Erica Melief, Eline J. Mertens, Leona Mezei, Norbert Mihut, Stephanie Mok, Gabor Molnar, Alice Mukora, Lindsay Ng, Kiet Ngo, Philip R. Nicovich, Julie Nyhus, Gaspar Olah, Aaron Oldre, Victoria Omstead, Attila Ozsvar, Daniel Park, Hanchuan Peng, Trangthanh Pham, Christina A. Pom, Lydia Potekhina, Ramkumar Rajanbabu, Shea Ransford, David Reid, Christine Rimorin, Augustin Ruiz, David Sandman, Josef Sulc, Susan M. Sunkin, Aaron Szafer, Viktor Szemenyei, Elliot R. Thomsen, Michael Tieu, Amy Torkelson, Jessica Trinh, Herman Tung, Wayne Wakeman, Femke Waleboer, Katelyn Ward, René Wilbers, Grace Williams, Zizhen Yao, Jae-Geun Yoon, Costas Anastassiou, Anton Arkhipov, Pal Barzo, Amy Bernard, Charles Cobbs, Philip C. de Witt Hamer, Richard G. Ellenbogen, Luke Esposito, Manuel Ferreira, Ryder P. Gwinn, Michael J. Hawrylycz, Patrick R. Hof, Sander Idema, Allan R. Jones, C. Dirk Keene, Andrew L. Ko, Gabe J. Murphy, Lydia Ng, Jeffrey G. Ojemann, Anoop P. Patel, John W. Phillips, Daniel L. Silbergeld, Kimberly Smith, Bosiljka Tasic, Rafael Yuste, Idan Segev, Christiaan P. J. de Kock, Huibert D. Mansvelder, Gabor Tamas, Hongkui Zeng, Christof Koch, Ed S. Lein
Read MoreNature
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Oct 01, 2021
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, Megan Crow, Rebecca D. Hodge, Fenna M. Krienen, Staci A. Sorensen, Jeroen Eggermont, Zizhen Yao, Brian D. Aevermann, Andrew I. Aldridge, Anna Bartlett, Darren Bertagnolli, Tamara Casper, Rosa G. Castanon, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Nick Dee, Nikolai Dembrow, Dinh Diep, Song-Lin Ding, Weixiu Dong, Rongxin Fang, Stephan Fischer, Melissa Goldman, Jeff Goldy, Lucas T. Graybuck, Brian R. Herb, Xiaomeng Hou, Jayaram Kancherla, Matthew Kroll, Kanan Lathia, Baldur van Lew, Yang Eric Li, Christine S. Liu, Hanqing Liu, Jacinta D. Lucero, Anup Mahurkar, Delissa McMillen, Jeremy A. Miller, Marmar Moussa, Joseph R. Nery, Philip R. Nicovich, Sheng-Yong Niu, Joshua Orvis, Julia K. Osteen, Scott Owen, Carter R. Palmer, Thanh Pham, Nongluk Plongthongkum, Olivier Poirion, Nora M. Reed, Christine Rimorin, Angeline Rivkin, William J. Romanow, Adriana E. Sedeño-Cortés, Kimberly Siletti, Saroja Somasundaram, Josef Sulc, Michael Tieu, Amy Torkelson, Herman Tung, Xinxin Wang, Fangming Xie, Anna Marie Yanny, Renee Zhang, Seth A. Ament, M. Margarita Behrens, Hector Corrada Bravo, Jerold Chun, Alexander Dobin, Jesse Gillis, Ronna Hertzano, Patrick R. Hof, Thomas Höllt, Gregory D. Horwitz, C. Dirk Keene, Peter V. Kharchenko, Andrew L. Ko, Boudewijn P. Lelieveldt, Chongyuan Luo, Eran A. Mukamel, António Pinto-Duarte, Sebastian Preissl, Aviv Regev, Bing Ren, Richard H. Scheuermann, Kimberly Smith, William J. Spain, Owen R. White, Christof Koch, Michael Hawrylycz, Bosiljka Tasic, Evan Z. Macosko, Steven A. McCarroll, Jonathan T. Ting, Hongkui Zeng, Kun Zhang, Guoping Feng, Joseph R. Ecker, Sten Linnarsson, Ed S. Lein
Read MoreCell
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Jun 10, 2021
Zizhen Yao, Cindy T. J. van Velthoven, Thuc Nghi Nguyen, Jeff Goldy, Adriana E. Sedeno-Cortes, Fahimeh Baftizadeh, Darren Bertagnolli, Tamara Casper, Megan Chiang, Kirsten Crichton, Song-Lin Ding, Olivia Fong, Emma Garren, Alexandra Glandon, Nathan W. Gouwens, James Gray, Lucas T. Graybuck, Michael J. Hawrylycz, Daniel Hirschstein, Matthew Kroll, Kanan Lathia, Changkyu Lee, Boaz Levi, Delissa McMillen, Stephanie Mok, Thanh Pham, Qingzhong Ren, Christine Rimorin, Nadiya Shapovalova, Josef Sulc, Susan M. Sunkin, Michael Tieu, Amy Torkelson, Herman Tung, Katelyn Ward, Nick Dee, Kimberly A. Smith, Bosiljka Tasic, Hongkui Zeng
Read MoreFrontiers in Neuroscience
Rodent Area Prostriata Converges Multimodal Hierarchical Inputs and Projects to the Structures Important for Visuomotor Behaviors
Jan 01, 2021
Chang-Hui Chen, Jin-Meng Hu, Shun-Yu Zhang, Xiao-Jun Xiang, Sheng-Qiang Chen, Song-Lin Ding
Read MoreHippocampus
Characterization of hippocampal subfields using ex vivo MRI and histology data: Lessons for in vivo segmentation
Jun 01, 2020
Robin de Flores, David Berron, Song-Lin Ding, Ranjit Ittyerah, John B. Pluta, Long Xie, Daniel H. Adler, John L. Robinson, Theresa Schuck, John Q. Trojanowski, Murray Grossman, Weixia Liu, Stephen Pickup, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich, Laura E. M. Wisse
Read MoreCell Reports
Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
May 19, 2020
Song-Lin Ding, Zizhen Yao, Karla E. Hirokawa, Thuc Nghi Nguyen, Lucas T. Graybuck, Olivia Fong, Phillip Bohn, Kiet Ngo, Kimberly A. Smith, Christof Koch, John W. Phillips, Ed S. Lein, Julie A. Harris, Bosiljka Tasic, Hongkui Zeng
Read MoreCell
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
May 14, 2020
Quanxin Wang, Song-Lin Ding, Yang Li, Josh Royall, David Feng, Phil Lesnar, Nile Graddis, Maitham Naeemi, Benjamin Facer, Anh Ho, Tim Dolbeare, Brandon Blanchard, Nick Dee, Wayne Wakeman, Karla E. Hirokawa, Aaron Szafer, Susan M. Sunkin, Seung Wook Oh, Amy Bernard, John W. Phillips, Michael Hawrylycz, Christof Koch, Hongkui Zeng, Julie A. Harris, Lydia Ng
Read MoreNature Communications
Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
Mar 03, 2020
Rebecca D. Hodge, Jeremy A. Miller, Mark Novotny, Brian E. Kalmbach, Jonathan T. Ting, Trygve E. Bakken, Brian D. Aevermann, Eliza R. Barkan, Madeline L. Berkowitz-Cerasano, Charles Cobbs, Francisco Diez-Fuertes, Song-Lin Ding, Jamison McCorrison, Nicholas J. Schork, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Anna Marie Yanny, Frank J. Steemers, John W. Phillips, Amy Bernard, Christof Koch, Roger S. Lasken, Richard H. Scheuermann, Ed S. Lein
Read MoreThe Journal of Comparative Neurology
Localization of area prostriata and its connections with primary visual cortex in rodent
Feb 15, 2020
Weiye Lu, Shengqiang Chen, Xiexian Chen, Jinmeng Hu, Aiguo Xuan, Song-Lin Ding
Read MoreFrontiers in Neuroanatomy
Afferent Projections to Area Prostriata of the Mouse
Jan 01, 2020
Jin-Meng Hu, Chang-Hui Chen, Sheng-Qiang Chen, Song-Lin Ding
Read MoreFrontiers in Neural Circuits
Homotopic Commissural Projections of Area Prostriata in Rat and Mouse: Comparison With Presubiculum and Parasubiculum
Jan 01, 2020
Chang-Hui Chen, Jin-Meng Hu, Sheng-Qiang Chen, Shi-Ming Liu, Song-Lin Ding
Read MoreAlzheimer's & Dementia (Amsterdam, Netherlands)
Progress update from the hippocampal subfields group
Dec 01, 2019
Rosanna K. Olsen, Valerie A. Carr, Ana M. Daugherty, Renaud La Joie, Robert S. C. Amaral, Katrin Amunts, Jean C. Augustinack, Arnold Bakker, Andrew R. Bender, David Berron, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, M. Mallar Chakravarty, Gaël Chételat, Robin de Flores, Jordan DeKraker, Song-Lin Ding, Mirjam I. Geerlings, Yushan Huang, Ricardo Insausti, Elliott G. Johnson, Prabesh Kanel, Olga Kedo, Kristen M. Kennedy, Attila Keresztes, Joshua K. Lee, Ulman Lindenberger, Susanne G. Mueller, Elizabeth M. Mulligan, Noa Ofen, Daniela J. Palombo, Lorenzo Pasquini, John Pluta, Naftali Raz, Karen M. Rodrigue, Margaret L. Schlichting, Yee Lee Shing, Craig E. L. Stark, Trevor A. Steve, Nanthia A. Suthana, Lei Wang, Markus Werkle-Bergner, Paul A. Yushkevich, Qijing Yu, Laura E. M. Wisse, Hippocampal Subfields Group
Read MoreNature
Conserved cell types with divergent features in human versus mouse cortex
Sep 01, 2019
Rebecca D. Hodge, Trygve E. Bakken, Jeremy A. Miller, Kimberly A. Smith, Eliza R. Barkan, Lucas T. Graybuck, Jennie L. Close, Brian Long, Nelson Johansen, Osnat Penn, Zizhen Yao, Jeroen Eggermont, Thomas Höllt, Boaz P. Levi, Soraya I. Shehata, Brian Aevermann, Allison Beller, Darren Bertagnolli, Krissy Brouner, Tamara Casper, Charles Cobbs, Rachel Dalley, Nick Dee, Song-Lin Ding, Richard G. Ellenbogen, Olivia Fong, Emma Garren, Jeff Goldy, Ryder P. Gwinn, Daniel Hirschstein, C. Dirk Keene, Mohamed Keshk, Andrew L. Ko, Kanan Lathia, Ahmed Mahfouz, Zoe Maltzer, Medea McGraw, Thuc Nghi Nguyen, Julie Nyhus, Jeffrey G. Ojemann, Aaron Oldre, Sheana Parry, Shannon Reynolds, Christine Rimorin, Nadiya V. Shapovalova, Saroja Somasundaram, Aaron Szafer, Elliot R. Thomsen, Michael Tieu, Gerald Quon, Richard H. Scheuermann, Rafael Yuste, Susan M. Sunkin, Boudewijn Lelieveldt, David Feng, Lydia Ng, Amy Bernard, Michael Hawrylycz, John W. Phillips, Bosiljka Tasic, Hongkui Zeng, Allan R. Jones, Christof Koch, Ed S. Lein
Read MoreHuman Brain Mapping
Automated segmentation of medial temporal lobe subregions on in vivo T1-weighted MRI in early stages of Alzheimer's disease
Aug 15, 2019
Long Xie, Laura E. M. Wisse, John Pluta, Robin de Flores, Virgine Piskin, Jose V. Manjón, Hongzhi Wang, Sandhitsu R. Das, Song-Lin Ding, David A. Wolk, Paul A. Yushkevich, Alzheimer's Disease Neuroimaging Initiative
Read MoreNature Neuroscience
Classification of electrophysiological and morphological neuron types in the mouse visual cortex
Jul 01, 2019
Nathan W. Gouwens, Staci A. Sorensen, Jim Berg, Changkyu Lee, Tim Jarsky, Jonathan Ting, Susan M. Sunkin, David Feng, Costas A. Anastassiou, Eliza Barkan, Kris Bickley, Nicole Blesie, Thomas Braun, Krissy Brouner, Agata Budzillo, Shiella Caldejon, Tamara Casper, Dan Castelli, Peter Chong, Kirsten Crichton, Christine Cuhaciyan, Tanya L. Daigle, Rachel Dalley, Nick Dee, Tsega Desta, Song-Lin Ding, Samuel Dingman, Alyse Doperalski, Nadezhda Dotson, Tom Egdorf, Michael Fisher, Rebecca A. de Frates, Emma Garren, Marissa Garwood, Amanda Gary, Nathalie Gaudreault, Keith Godfrey, Melissa Gorham, Hong Gu, Caroline Habel, Kristen Hadley, James Harrington, Julie A. Harris, Alex Henry, DiJon Hill, Sam Josephsen, Sara Kebede, Lisa Kim, Matthew Kroll, Brian Lee, Tracy Lemon, Katherine E. Link, Xiaoxiao Liu, Brian Long, Rusty Mann, Medea McGraw, Stefan Mihalas, Alice Mukora, Gabe J. Murphy, Lindsay Ng, Kiet Ngo, Thuc Nghi Nguyen, Philip R. Nicovich, Aaron Oldre, Daniel Park, Sheana Parry, Jed Perkins, Lydia Potekhina, David Reid, Miranda Robertson, David Sandman, Martin Schroedter, Cliff Slaughterbeck, Gilberto Soler-Llavina, Josef Sulc, Aaron Szafer, Bosiljka Tasic, Naz Taskin, Corinne Teeter, Nivretta Thatra, Herman Tung, Wayne Wakeman, Grace Williams, Rob Young, Zhi Zhou, Colin Farrell, Hanchuan Peng, Michael J. Hawrylycz, Ed Lein, Lydia Ng, Anton Arkhipov, Amy Bernard, John W. Phillips, Hongkui Zeng, Christof Koch
Read MoreNature Neuroscience
Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type
Sep 01, 2018
Eszter Boldog, Trygve E. Bakken, Rebecca D. Hodge, Mark Novotny, Brian D. Aevermann, Judith Baka, Sándor Bordé, Jennie L. Close, Francisco Diez-Fuertes, Song-Lin Ding, Nóra Faragó, Ágnes K. Kocsis, Balázs Kovács, Zoe Maltzer, Jamison M. McCorrison, Jeremy A. Miller, Gábor Molnár, Gáspár Oláh, Attila Ozsvár, Márton Rózsa, Soraya I. Shehata, Kimberly A. Smith, Susan M. Sunkin, Danny N. Tran, Pratap Venepally, Abby Wall, László G. Puskás, Pál Barzó, Frank J. Steemers, Nicholas J. Schork, Richard H. Scheuermann, Roger S. Lasken, Ed S. Lein, Gábor Tamás
Read MoreProceedings of the National Academy of Sciences of the United States of America
Characterizing the human hippocampus in aging and Alzheimer's disease using a computational atlas derived from ex vivo MRI and histology
Apr 17, 2018
Daniel H. Adler, Laura E. M. Wisse, Ranjit Ittyerah, John B. Pluta, Song-Lin Ding, Long Xie, Jiancong Wang, Salmon Kadivar, John L. Robinson, Theresa Schuck, John Q. Trojanowski, Murray Grossman, John A. Detre, Mark A. Elliott, Jon B. Toledo, Weixia Liu, Stephen Pickup, Michael I. Miller, Sandhitsu R. Das, David A. Wolk, Paul A. Yushkevich
Read MoreeNeuro
Combinatorial Inputs to the Ventral Striatum from the Temporal Cortex, Frontal Cortex, and Amygdala: Implications for Segmenting the Striatum
Dec 01, 2017
Eun Young Choi, Song-Lin Ding, Suzanne N. Haber
Read MoreNeuroImage
Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability
Jan 01, 2017
Long Xie, John B. Pluta, Sandhitsu R. Das, Laura E. M. Wisse, Hongzhi Wang, Lauren Mancuso, Dasha Kliot, Brian B. Avants, Song-Lin Ding, José V. Manjón, David A. Wolk, Paul A. Yushkevich
Read MoreThe Journal of Comparative Neurology
Comprehensive cellular-resolution atlas of the adult human brain
Nov 01, 2016
Song-Lin Ding, Joshua J. Royall, Susan M. Sunkin, Lydia Ng, Benjamin A. C. Facer, Phil Lesnar, Angie Guillozet-Bongaarts, Bergen McMurray, Aaron Szafer, Tim A. Dolbeare, Allison Stevens, Lee Tirrell, Thomas Benner, Shiella Caldejon, Rachel A. Dalley, Nick Dee, Christopher Lau, Julie Nyhus, Melissa Reding, Zackery L. Riley, David Sandman, Elaine Shen, Andre van der Kouwe, Ani Varjabedian, Michelle Wright, Lilla Zöllei, Chinh Dang, James A. Knowles, Christof Koch, John W. Phillips, Nenad Sestan, Paul Wohnoutka, H. Ronald Zielke, John G. Hohmann, Allan R. Jones, Amy Bernard, Michael J. Hawrylycz, Patrick R. Hof, Bruce Fischl, Ed S. Lein
Read MoreNature
A comprehensive transcriptional map of primate brain development
Jul 21, 2016
Trygve E. Bakken, Jeremy A. Miller, Song-Lin Ding, Susan M. Sunkin, Kimberly A. Smith, Lydia Ng, Aaron Szafer, Rachel A. Dalley, Joshua J. Royall, Tracy Lemon, Sheila Shapouri, Kaylynn Aiona, James Arnold, Jeffrey L. Bennett, Darren Bertagnolli, Kristopher Bickley, Andrew Boe, Krissy Brouner, Stephanie Butler, Emi Byrnes, Shiella Caldejon, Anita Carey, Shelby Cate, Mike Chapin, Jefferey Chen, Nick Dee, Tsega Desta, Tim A. Dolbeare, Nadia Dotson, Amanda Ebbert, Erich Fulfs, Garrett Gee, Terri L. Gilbert, Jeff Goldy, Lindsey Gourley, Ben Gregor, Guangyu Gu, Jon Hall, Zeb Haradon, David R. Haynor, Nika Hejazinia, Anna Hoerder-Suabedissen, Robert Howard, Jay Jochim, Marty Kinnunen, Ali Kriedberg, Chihchau L. Kuan, Christopher Lau, Chang-Kyu Lee, Felix Lee, Lon Luong, Naveed Mastan, Ryan May, Jose Melchor, Nerick Mosqueda, Erika Mott, Kiet Ngo, Julie Nyhus, Aaron Oldre, Eric Olson, Jody Parente, Patrick D. Parker, Sheana Parry, Julie Pendergraft, Lydia Potekhina, Melissa Reding, Zackery L. Riley, Tyson Roberts, Brandon Rogers, Kate Roll, David Rosen, David Sandman, Melaine Sarreal, Nadiya Shapovalova, Shu Shi, Nathan Sjoquist, Andy J. Sodt, Robbie Townsend, Lissette Velasquez, Udi Wagley, Wayne B. Wakeman, Cassandra White, Crissa Bennett, Jennifer Wu, Rob Young, Brian L. Youngstrom, Paul Wohnoutka, Richard A. Gibbs, Jeffrey Rogers, John G. Hohmann, Michael J. Hawrylycz, Robert F. Hevner, Zoltán Molnár, John W. Phillips, Chinh Dang, Allan R. Jones, David G. Amaral, Amy Bernard, Ed S. Lein
Read MoreThe Journal of Comparative Neurology
Organization and Detailed Parcellation of Human Hippocampal Head and Body Regions Based on a Combined Analysis of Cyto- and Chemoarchitecture
Oct 15, 2015
Song-Lin Ding, Gary W. Van Hoesen
Read MoreNeuroImage
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: towards a harmonized segmentation protocol
May 01, 2015
Paul A. Yushkevich, Robert S. C. Amaral, Jean C. Augustinack, Andrew R. Bender, Jeffrey D. Bernstein, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, Valerie A. Carr, M. Mallar Chakravarty, Gaël Chételat, Ana M. Daugherty, Lila Davachi, Song-Lin Ding, Arne Ekstrom, Mirjam I. Geerlings, Abdul Hassan, Yushan Huang, J. Eugenio Iglesias, Renaud La Joie, Geoffrey A. Kerchner, Karen F. LaRocque, Laura A. Libby, Nikolai Malykhin, Susanne G. Mueller, Rosanna K. Olsen, Daniela J. Palombo, Mansi B. Parekh, John B. Pluta, Alison R. Preston, Jens C. Pruessner, Charan Ranganath, Naftali Raz, Margaret L. Schlichting, Dorothee Schoemaker, Sachi Singh, Craig E. L. Stark, Nanthia Suthana, Alexa Tompary, Marta M. Turowski, Koen Van Leemput, Anthony D. Wagner, Lei Wang, Julie L. Winterburn, Laura E. M. Wisse, Michael A. Yassa, Michael M. Zeineh, Hippocampal Subfields Group (HSG)
Read MoreCerebral Cortex (New York, N.Y.: 1991)
Large-scale brain networks of the human left temporal pole: a functional connectivity MRI study
Mar 01, 2015
Belen Pascual, Joseph C. Masdeu, Mark Hollenbeck, Nikos Makris, Ricardo Insausti, Song-Lin Ding, Bradford C. Dickerson
Read MoreNature
Transcriptional landscape of the prenatal human brain
Apr 10, 2014
Jeremy A. Miller, Song-Lin Ding, Susan M. Sunkin, Kimberly A. Smith, Lydia Ng, Aaron Szafer, Amanda Ebbert, Zackery L. Riley, Joshua J. Royall, Kaylynn Aiona, James M. Arnold, Crissa Bennet, Darren Bertagnolli, Krissy Brouner, Stephanie Butler, Shiella Caldejon, Anita Carey, Christine Cuhaciyan, Rachel A. Dalley, Nick Dee, Tim A. Dolbeare, Benjamin A. C. Facer, David Feng, Tim P. Fliss, Garrett Gee, Jeff Goldy, Lindsey Gourley, Benjamin W. Gregor, Guangyu Gu, Robert E. Howard, Jayson M. Jochim, Chihchau L. Kuan, Christopher Lau, Chang-Kyu Lee, Felix Lee, Tracy A. Lemon, Phil Lesnar, Bergen McMurray, Naveed Mastan, Nerick Mosqueda, Theresa Naluai-Cecchini, Nhan-Kiet Ngo, Julie Nyhus, Aaron Oldre, Eric Olson, Jody Parente, Patrick D. Parker, Sheana E. Parry, Allison Stevens, Mihovil Pletikos, Melissa Reding, Kate Roll, David Sandman, Melaine Sarreal, Sheila Shapouri, Nadiya V. Shapovalova, Elaine H. Shen, Nathan Sjoquist, Clifford R. Slaughterbeck, Michael Smith, Andy J. Sodt, Derric Williams, Lilla Zöllei, Bruce Fischl, Mark B. Gerstein, Daniel H. Geschwind, Ian A. Glass, Michael J. Hawrylycz, Robert F. Hevner, Hao Huang, Allan R. Jones, James A. Knowles, Pat Levitt, John W. Phillips, Nenad Sestan, Paul Wohnoutka, Chinh Dang, Amy Bernard, John G. Hohmann, Ed S. Lein
Read MoreThe Journal of Comparative Neurology
Comparative anatomy of the prosubiculum, subiculum, presubiculum, postsubiculum, and parasubiculum in human, monkey, and rodent
Dec 15, 2013
Song-Lin Ding
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