Scientific Training and Tutorials

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Scientific Training and Tutorials

Webinars, methods, guides, lectures, and tools for accessing and using open science resources from the Allen Institute

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- Video
Setting up the WTC parental line for cardiac differentiation
Helpful tips for setting up the WTC parental line for cardiac differentiation
- Video
Techniques while working with Matrigel
Helpful tips while working with Matrigel.
- Video
Cryopreservation of clonal human iPS cell lines in 96-well plates
Helpful tips on how to cryopreserve clonal human iPS cells in 96-well plates.
- Video
ExA-SPIM | Scientific Overview
A high-level explanation of the protocols necessary to implement the Expansion Selective Plane Illumination Microscopy (ExA–SPIM) pipeline
- Video
Allen Brain Cell (ABC) Atlas | Tutorial
Get an overview of the Allen Brain Cell (ABC) Atlas platform, detailing the methodologies and technologies used to classify and understand the diversity of cell types in the brain.
- Video
Allen Mouse Brain Atlas | Tutorial
The Allen Mouse Brain Atlas is a comprehensive, high-resolution atlas of gene expression in the adult mouse brain.
- Video
MapMyCells | Tutorial
With MapMyCells, scientists can discover what cell types their transcriptomics and spatial data corresponds
- Video
Allen Cell Segmenter | Tutorial
The goal of the Allen Cell Segmenter was to extract the most high-quality and biologically informative segmentations in 3d images.
- Video
The Allen Cell Collection | Tutorial
The Allen Cell Collection is a complete list of all the cell lines we’ve generated. It includes quality control data, gene editing methods, SOPs for the correct use of our cells, and more.
- Video
Allen Human Brain Atlas | Tutorial
Overview of the Allen Human Brain Atlas
- Video
Allen Brain Observatory: Two-Photon Dataset | Tutorial
Guided walkthrough on how to work with the Visual Coding Two-Photon Dataset from the Allen Institute for Brain Science
- Video
Allen Brain Observatory: Neuropixels Dataset | Tutorial
A guided walkthrough showing how to access the Neuropixels dataset
- Video
Common Coordinate Framework | Tutorial
Discover how to use the Common Coordinate Framework.
- Video
Cell Types Database and Transcriptomic Explorer | Tutorial
The Allen Cell Type Database and Transcriptomic Explorer presents multimodal cell type data and taxonomies related to mice and human brains.
- Video
MICrONS Explorer: Neuroglancer | Tutorial
Learn how to visualize and interact with our datasets using neuroglancer.
- Video
MICrONS Explorer: Adding Annotations | Tutorial
Learn how users can add annotations of different types to the dataset using an Annotation layer.
- Video
MICrONS Explorer: Analyzing and Visualizing Meshes | Tutorial
Learn how to make beautiful visualizations and extract relevant shape and morphology features using 3D segmentation in mesh form.
- Video
MICrONS Explorer: Downloading Images and Segmentations
In this tutorial, you’ll learn about downloading images and segmentations from the MICrONS Explorer.

Scientific Training and Tutorials

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