Scientific Publications

Neural precursors of deliberate and arbitrary decisions in the study of voluntary action

eLife, 2019-10-23

Maoz U, Yaffe G, Koch C, Mudrik L

Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior

Cell, 2019-10-17

Kim DW, Yao Z, Graybuck LT, Kim TK, Nguyen TN, Smith KA, Fong O, Yi L, Koulena N, Pierson N, Shah S, Lo L, Pool AH, Oka Y, Pachter L, Cai L, Tasic B, Zeng H, Anderson DJ

Wide. Fast. Deep. Recent Advances in Multi-Photon Microscopy of in vivo Neuronal Activity

Journal of Neuroscience, 2019-10-2

Lecoq J, Orlova N, Grewe BF

Visual Cortex Gains Independence from Peripheral Drive before Eye Opening

Neuron, 2019-9-24

Gribizis A, Ge X, Daigle TL, Ackman JB, Zeng H, Lee D, Crair MC

Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas

PLoS One, 2019-9-4

Weed N, Bakken T, Graddis N, Gouwens N, Millman D, Hawrylycz M, Waters J

Conserved cell types with divergent features in human versus mouse cortex

Nature, 2019-8-21

Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, Aevermann B, Beller A, Bertagnolli D, Brouner K, Casper T, Cobbs C, Dalley R, Dee N, Ding SL, Ellenbogen RG, Fong O, Garren E, Goldy J, Gwinn RP, Hirschstein D, Keene CD, Keshk M, Ko AL, Lathia K, Mahfouz A, Maltzer Z, McGraw M, Nguyen TN, Nyhus J, Ojemann JG, Oldre A, Parry S, Reynolds S, Rimorin C, Shapovalova NV, Somasundaram S, Szafer A, Thomsen ER, Tieu M, Quon G, Scheuermann RH, Yuste R, Sunkin SM, Lelieveldt B, Feng D, Ng L, Bernard A, Hawrylycz M, Phillips JW, Tasic B, Zeng H, Jones AR, Koch C, Lein ES

Localization of area prostriata and its connections with primary visual cortex in rodent

Journal of Comparative Neurology, 2019-8-19

Lu W, Chen S, Chen X, Hu J, Xuan A, Ding SL

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

Science, 2019-8-16

Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, Paninski L, Macklin JJ, Murphy GJ, Podgorski K, Lin BJ, Chen TW, Turner GC, Liu Z, Koyama M, Svoboda K, Ahrens MB, Lavis LD, Schreiter ER

New insights into the development of the human cerebral cortex

Journal of Anatomy, 2019-8-2

Molnár Z, Clowry GJ, Šestan N, Alzu'bi A, Bakken T, Hevner RF, Hüppi PS, Kostović I, Rakic P, Anton ES, Edwards D, Garcez P, Hoerder-Suabedissen A, Kriegstein A

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

Nature Communications, 2019-8-2

Wang Y, Li Q, Liu L, Zhou Z, Ruan Z, Kong L, Li Y, Wang Y, Zhong N, Chai R, Luo X, Guo Y, Hawrylycz M, Luo Q, Gu Z, Xie W, Zeng H, Peng H

Dimensionality in recurrent spiking networks: Global trends in activity and local origins in connectivity

PLoS Computational Biology, 2019-7-12

Recanatesi S, Ocker GK, Buice MA, Shea-Brown E

Multi-immersion open-top light-sheet microscope for high-throughput imaging of cleared tissues

Nature Communications, 2019-7-4

Glaser AK, Reder NP, Chen Y, Yin C, Wei L, Kang S, Barner LA, Xie W, McCarty EF, Mao C, Halpern AR, Stoltzfus CR, Daniels JS, Gerner MY, Nicovich PR, Vaughan JC, True LD, Liu JTC

Experience shapes activity dynamics and stimulus coding of VIP inhibitory and excitatory cells

bioRxiv, 2019-7-1

Garrett M, Manavi S, Roll K, Ollerenshaw D, Groblewski P, Kiggins J, Jia X, Casal L, Mace K, Williford A, Leon A, Mihalas S, Olsen SR

Classification of electrophysiological and morphological neuron types in mouse visual cortex

Nature Neuroscience, 2019-6-17

Gouwens NW, Sorensen SA, Berg J, Lee C, Jarsky T, Ting J, Sunkin S, Feng D, Anastassiou C, Barkan E, Bickley K, Blesie N, Braun T, Brouner K, Budzillo A, Caldejon S, Casper T, Castelli D, Chong P, Crichton K, Cuhaciyan C, Daigle T, Dalley R, Dee N, Desta T, Dingman S, Doperalski A, Dotson N, Egdorf T, Fisher M, de Frates RA, Garren E, Garwood M, Gary A, Gaudreault N, Godfrey K, Gorham M, Gu H, Habel C, Hadley K, Harrington J, Harris J, Henry A, Hill D, Josephsen S, Kebede S, Kim L, Kroll M, Lee B, Lemon T, Liu X, Long B, Mann R, McGraw M, Mihalas S, Mukora A, Murphy GJ, Ng L, Ngo K, Nguyen TN, Nicovich PR, Oldre A, Park D, Parry S, Perkins J, Potekhina L, Reid D, Robertson M, Sandman D, Schroedter M, Slaughterbeck C, Soler-Llavina C, Sulc J, Szafer A, Tasic B, Taskin N, Teeter C, Thatra N, Tung H, Wakeman W, Williams G, Young R, Zhou Z, Farrell C, Peng H, Hawrylycz MJ, Lein E, Ng L, Arkhipov A, Bernard A, Phillips J, Zeng H, Koch C

Progress update from the hippocampal subfields group

Alzheimers & Dementia, 2019-6-13

Olsen RK, Carr VA, Daugherty AM, La Joie R, Amaral RSC, Amunts K, Augustinack JC, Bakker A, Bender AR, Berron D, Boccardi M, Bocchetta M, Burggren AC, Chakravarty MM8, Chételat G, de Flores R, DeKraker J, Ding SL, Geerlings MI, Huang Y, Insausti R, Johnson EG, Kanel P, Kedo O, Kennedy KM, Keresztes A, Lee JK, Lindenberger U, Mueller SG, Mulligan EM, Ofen N, Palombo DJ, Pasquini L, Pluta J, Raz N, Rodrigue KM, Schlichting ML, Lee Shing Y, Stark CEL, Steve TA, Suthana NA, Wang L, Werkle-Bergner M, Yushkevich PA, Yu Q, Wisse LEM

Neuronal cell-subtype specificity of neural synchronization in mouse primary visual cortex

Nature Communications, 2019-6-10

Knoblich U, Huang L, Zeng H, Li L

An Inflammatory Landscape for Preoperative Neurologic Deficits in Glioblastoma

Frontiers in Genetics, 2019-6-4

Katrib A, Jeong HH, Fransen NL, Henzel KS, Miller JA

Single-cell activity tracking reveals that orbitofrontal neurons acquire and maintain a long-term memory to guide behavioral adaptation

Nature Neuroscience, 2019-6-3

Namboodiri VMK, Otis JM, van Heeswijk K, Voets ES, Alghorazi RA, Rodriguez-Romaguera J, Mihalas S, Stuber GD

Automated segmentation of medial temporal lobe subregions on in vivo T1-weighted MRI in early stages of Alzheimer's disease

Human Brain Mapping, 2019-4-29

Xie L, Wisse LEM, Pluta J, de Flores R, Piskin V, Manjón JV, Wang H, Das SR, Ding SL, Wolk DA, Yushkevich PA

Synchronization dependent on spatial structures of a mesoscopic whole-brain network

PLoS Computational Biology, 2019-4-23

Choi H, Mihalas S

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