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Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types

Cell Reports, 2022-8-9

Nandi A, Chartrand T, Van Geit W, Buchin A, Yao Z, Lee SY, Wei Y, Kalmbach B, Lee B, Lein E, Berg J, Sümbül U, Koch C, Tasic B, Anastassiou CA

A scalable and modular automated pipeline for stitching of large electron microscopy datasets

eLife, 2022-7-26

Mahalingam G, Torres R, Kapner D, Trautman ET, Fliss T, Seshamani S, Perlman E, Young R, Kinn S, Buchanan J, Takeno MM, Yin W, Bumbarger DJ, Gwinn RP, Nyhus J, Lein E, Smith SJ, Reid RC, Khairy KA, Saalfeld S, Collman F, Macarico da Costa N

What is a cell type and how to define it?

Cell, 2022-7-21

Zeng H

Neural Algorithms and Circuits for Motor Planning

Annual Review of Neuroscience, 2022-7-8

Inagaki HK, Chen S, Daie K, Finkelstein A, Fontolan L, Romani S, Svoboda K

Strong and reliable synaptic communication between pyramidal neurons in adult human cerebral cortex

Cerebral Cortex, 2022-7-8

Hunt S, Leibner Y, Mertens EJ, Barros-Zulaica N, Kanari L, Heistek TS, Karnani MM, Aardse R, Wilbers R, Heyer DB, Goriounova NA, Verhoog MB, Testa-Silva G, Obermayer J, Versluis T, Benavides-Piccione R, de Witt-Hamer P, Idema S, Noske DP, Baayen JC, Lein ES, DeFelipe J, Markram H, Mansvelder HD, Schürmann F, Segev I, de Kock CPJ

Intersectional mapping of multi-transmitter neurons and other cell types in the brain

Cell Reports, 2022-7-5

Xu J, Jo A, DeVries RP, Deniz S, Cherian S, Sunmola I, Song X, Marshall JJ, Gruner KA, Daigle TL, Contractor A, Lerner TN, Zeng H, Zhu Y

Conservation and divergence of cortical cell organization in human and mouse revealed by MERFISH

Science, 2022-6-30

Fang R, Xia C, Close JL, Zhang M, He J, Huang Z, Halpern AR, Long B, Miller JA, Lein ES, Zhuang X

Cell type matching in single-cell RNA-sequencing data using FR-Match

Scientific Reports, 2022-6-15

Zhang Y, Aevermann B, Gala R, Scheuermann RH

Verbal and General IQ Associate with Supragranular Layer Thickness and Cell Properties of the Left Temporal Cortex

Cerebral Cortex, 2022-5-31

Heyer DB, Wilbers R, Galakhova AA, Hartsema E, Braak S, Hunt S, Verhoog MB, Muijtjens ML, Mertens EJ, Idema S, Baayen JC, de Witt Hamer P, Klein M, McGraw M, Lein ES, de Kock CPJ, Mansvelder HD, Goriounova NA

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

Nature Methods, 2022-5-11

Glaser AK, Bishop KW, Barner LA, Susaki EA, Kubota SI, Gao G, Serafin RB, Balaram P, Turschak E, Nicovich PR, Lai H, Lucas LAG, Yi Y, Nichols EK, Huang H, Reder NP, Wilson JJ, Sivakumar R, Shamskhou E, Stoltzfus CR, Wei X, Hempton AK, Pende M, Murawala P, Dodt HU, Imaizumi T, Shendure J, Beliveau BJ, Gerner MY, Xin L, Zhao H, True LD, Reid RC, Chandrashekar J, Ueda HR, Svoboda K, Liu JTC

Columnar Localization and Laminar Origin of Cortical Surface Electrical Potentials

Journal of Neuroscience, 2022-5-4

Baratham VL, Dougherty ME, Hermiz J, Ledochowitsch P, Maharbiz MM, Bouchard KE

Multi-regional module-based signal transmission in mouse visual cortex

Neuron, 2022-5-4

Jia X, Siegle JH, Durand S, Heller G, Ramirez TK, Koch C, Olsen SR

Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia

Proceedings of the National Academy of Sciences, 2022-4-12

Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE Jr, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS

IIT, half masked and half disfigured

Behavioral and Brain Sciences, 2022-3-23

Tononi G, Boly M, Grasso M, Hendren J, Juel BE, Mayner WGP, Marshall W, Koch C

Brain organoids, consciousness, ethics and moral status

Seminars in Cell & Developmental Biology, 2022-3-23

Jeziorski J, Brandt R, Evans JH, Campana W, Kalichman M, Thompson E, Goldstein L, Koch C, Muotri AR

Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity

Cell, 2022-3-17

Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, Kemnitz N, Ih D, Silversmith WM, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Mu S, Wong W, Jordan CS, Castro M, Buchanan J, Bumbarger DJ, Takeno M, Torres R, Mahalingam G, Elabbady L, Li Y, Cobos E, Zhou P, Suckow S, Becker L, Paninski L, Polleux F, Reimer J, Tolias AS, Reid RC, da Costa NM, Seung HS

Local connectivity and synaptic dynamics in mouse and human neocortex

Science, 2022-3-11

Campagnola L, Seeman SC, Chartrand T, Kim L, Hoggarth A, Gamlin C, Ito S, Trinh J, Davoudian P, Radaelli C, Kim MH, Hage T, Braun T, Alfiler L, Andrade J, Bohn P, Dalley R, Henry A, Kebede S, Alice M, Sandman D, Williams G, Larsen R, Teeter C, Daigle TL, Berry K, Dotson N, Enstrom R, Gorham M, Hupp M, Dingman Lee S, Ngo K, Nicovich PR, Potekhina L, Ransford S, Gary A, Goldy J, McMillen D, Pham T, Tieu M, Siverts L, Walker M, Farrell C, Schroedter M, Slaughterbeck C, Cobb C, Ellenbogen R, Gwinn RP, Keene CD, Ko AL, Ojemann JG, Silbergeld DL, Carey D, Casper T, Crichton K, Clark M, Dee N, Ellingwood L, Gloe J, Kroll M, Sulc J, Tung H, Wadhwani K, Brouner K, Egdorf T, Maxwell M, McGraw M, Pom CA, Ruiz A, Bomben J, Feng D, Hejazinia N, Shi S, Szafer A, Wakeman W, Phillips J, Bernard A, Esposito L, D'Orazi FD, Sunkin S, Smith K, Tasic B, Arkhipov A, Sorensen S, Lein E, Koch C, Murphy G, Zeng H, Jarsky T

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