Scientific Publications

A large-scale, standardized physiological survey reveals higher order coding throughout the mouse visual cortex

Nature Neuroscience, 2019-12-16

de Vries S, Lecoq J, Buice MA, Groblewski PA, Ocker GK, Oliver M, Feng F, Cain N, Ledochowitsch P, Millman D, Roll K, Garrett M, Keenan T, Kuan L, Mihalas S, Olsen S, Thompson C, Wakeman W, Waters J, Williams D, Barber C, Berbesque N, Blanchard B, Bowles N, Caldejon S, Casal L, Cho A, Cross S, Dang C, Dolbeare T, Edwards M, Galbraith J, Gaudreault N, Griffin F, Hargrave P, Howard R, Huang L, Jewell S, Keller N, Knoblich U, Larkin J, Larsen R, Lau C, Lee E, Lee F, Leon A, Li L, Long F, Luviano J, Mace K, Nguyen T, Perkins J, Robertson M, Seid S, Shea-Brown E, Shi J, Sjoquist N, Slaughterbeck C, Sullivan D, Valenza R, White C, Williford A, Witten D, Zhuang J, Zeng H, Farrell C, Ng L, Bernard A, Phillips JW, R Reid C, Koch C

Individual structural features constrain the mouse functional connectome

Proceedings of the National Academy of Sciences, 2019-12-11

Melozzi F, Bergmann E, Harris JA, Kahn I, Jirsa V, Bernard C

Sex-Based Analysis of De Novo Variants in Neurodevelopmental Disorders

American Journal of Human Genetics, 2019-11-25

Turner TN, Wilfert AB, Bakken TE, Bernier RA, Pepper MR, Zhang Z, Torene RI, Retterer K, Eichler EE

Separation of hemodynamic signals from GCaMP fluorescence measured with widefield imaging

Journal of Neurophysiology, 2019-11-20

Valley MT, Moore MG, Zhuang J, Mesa N, Castelli D, Sullivan D, Reimers M, Waters J

Genetic Identification of Vagal Sensory Neurons That Control Feeding

Cell, 2019-11-14

Bai L, Mesgarzadeh S, Ramesh KS, Huey EL, Liu Y, Gray LA, Aitken TJ, Chen Y, Beutler LR, Ahn JS, Madisen L, Zeng H, Krasnow MA, Knight ZA

Single-cell transcriptomic evidence for dense intracortical neuropeptide networks.

eLife, 2019-11-11

Smith SJ, Sümbül U, Graybuck LT, Collman F, Seshamani S, Gala R, Gliko O, Elabbady L, Miller JA, Bakken TE, Rossier J, Yao Z, Lein E, Zeng H, Tasic B, Hawrylycz M

Characterization of hippocampal subfields using ex vivo MRI and histology data: Lessons for in vivo segmentation

Hippocampus, 2019-11-1

de Flores R, Berron D, Ding SL, Ittyerah R, Pluta JB, Xie L, Adler DH, Robinson JL, Schuck T, Trojanowski JQ, Grossman M, Liu W, Pickup S, Das SR, Wolk DA, Yushkevich PA, Wisse LEM

Hierarchical organization of cortical and thalamic connectivity

Nature, 2019-10-30

Harris JA, Mihalas S, Hirokawa KE, Whitesell JD, Choi H, Bernard A, Bohn P, Caldejon S, Casal L, Cho A, Feiner A, Feng D, Gaudreault N, Gerfen CR, Graddis N, Groblewski PA, Henry AM, Ho A, Howard R, Knox JE, Kuan L, Kuang X, Lecoq J, Lesnar P, Li Y, Luviano J, McConoughey S, Mortrud MT, Naeemi M, Ng L, Oh SW, Ouellette B, Shen E, Sorensen SA, Wakeman W2, Wang Q2, Wang Y, Williford A, Phillips JW, Jones AR, Koch C, Zeng H

Kilohertz two-photon brain imaging in awake mice

Nature Methods, 2019-10-28

Zhang T, Hernandez O, Chrapkiewicz R, Shai A, Wagner MJ, Zhang Y, Wu CH, Li JZ, Inoue M, Gong Y, Ahanonu B, Zeng H, Bito H, Schnitzer MJ

Neural precursors of deliberate and arbitrary decisions in the study of voluntary action

eLife, 2019-10-23

Maoz U, Yaffe G, Koch C, Mudrik L

Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior

Cell, 2019-10-17

Kim DW, Yao Z, Graybuck LT, Kim TK, Nguyen TN, Smith KA, Fong O, Yi L, Koulena N, Pierson N, Shah S, Lo L, Pool AH, Oka Y, Pachter L, Cai L, Tasic B, Zeng H, Anderson DJ

Wide. Fast. Deep. Recent Advances in Multi-Photon Microscopy of in vivo Neuronal Activity

Journal of Neuroscience, 2019-10-2

Lecoq J, Orlova N, Grewe BF

Visual Cortex Gains Independence from Peripheral Drive before Eye Opening

Neuron, 2019-9-24

Gribizis A, Ge X, Daigle TL, Ackman JB, Zeng H, Lee D, Crair MC

Aberration-free multi-plane imaging of neural activity from the mammalian brain using a fast-switching liquid crystal spatial light modulator

Biomed Opt Express, 2019-9-11

Liu R, Ball N, Brockill J, Kuan L, Millman D, White C, Leon A, Williams D, Nishiwaki S, de Vries S, Larkin J, Sullivan D, Slaughterbeck C, Farrell C, Saggau P

Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas

PLoS One, 2019-9-4

Weed N, Bakken T, Graddis N, Gouwens N, Millman D, Hawrylycz M, Waters J

Conserved cell types with divergent features in human versus mouse cortex

Nature, 2019-8-21

Hodge RD, Bakken TE, Miller JA, Smith KA, Barkan ER, Graybuck LT, Close JL, Long B, Johansen N, Penn O, Yao Z, Eggermont J, Höllt T, Levi BP, Shehata SI, Aevermann B, Beller A, Bertagnolli D, Brouner K, Casper T, Cobbs C, Dalley R, Dee N, Ding SL, Ellenbogen RG, Fong O, Garren E, Goldy J, Gwinn RP, Hirschstein D, Keene CD, Keshk M, Ko AL, Lathia K, Mahfouz A, Maltzer Z, McGraw M, Nguyen TN, Nyhus J, Ojemann JG, Oldre A, Parry S, Reynolds S, Rimorin C, Shapovalova NV, Somasundaram S, Szafer A, Thomsen ER, Tieu M, Quon G, Scheuermann RH, Yuste R, Sunkin SM, Lelieveldt B, Feng D, Ng L, Bernard A, Hawrylycz M, Phillips JW, Tasic B, Zeng H, Jones AR, Koch C, Lein ES

Localization of area prostriata and its connections with primary visual cortex in rodent

Journal of Comparative Neurology, 2019-8-19

Lu W, Chen S, Chen X, Hu J, Xuan A, Ding SL

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging

Science, 2019-8-16

Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, Paninski L, Macklin JJ, Murphy GJ, Podgorski K, Lin BJ, Chen TW, Turner GC, Liu Z, Koyama M, Svoboda K, Ahrens MB, Lavis LD, Schreiter ER

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

Nature Communications, 2019-8-2

Wang Y, Li Q, Liu L, Zhou Z, Ruan Z, Kong L, Li Y, Wang Y, Zhong N, Chai R, Luo X, Guo Y, Hawrylycz M, Luo Q, Gu Z, Xie W, Zeng H, Peng H

New insights into the development of the human cerebral cortex

Journal of Anatomy, 2019-8-2

Molnár Z, Clowry GJ, Šestan N, Alzu'bi A, Bakken T, Hevner RF, Hüppi PS, Kostović I, Rakic P, Anton ES, Edwards D, Garcez P, Hoerder-Suabedissen A, Kriegstein A

[[item.fields.title]] [[error.type]]

[[error.msg]]

[[item.fields.title]] [[error.type]] - We've encountered an error

[[error.msg]]

Let us know: info@alleninstitute.org