Scientific Publications

Columnar Localization and Laminar Origin of Cortical Surface Electrical Potentials

Journal of Neuroscience, 2022-5-4

Baratham VL, Dougherty ME, Hermiz J, Ledochowitsch P, Maharbiz MM, Bouchard KE

Multi-regional module-based signal transmission in mouse visual cortex

Neuron, 2022-5-4

Jia X, Siegle JH, Durand S, Heller G, Ramirez TK, Koch C, Olsen SR

Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia

Proceedings of the National Academy of Sciences, 2022-4-12

Su-Feher L, Rubin AN, Silberberg SN, Catta-Preta R, Lim KJ, Ypsilanti AR, Zdilar I, McGinnis CS, McKinsey GL, Rubino TE Jr, Hawrylycz MJ, Thompson C, Gartner ZJ, Puelles L, Zeng H, Rubenstein JLR, Nord AS

IIT, half masked and half disfigured

Behavioral and Brain Sciences, 2022-3-23

Tononi G, Boly M, Grasso M, Hendren J, Juel BE, Mayner WGP, Marshall W, Koch C

Brain organoids, consciousness, ethics and moral status

Seminars in Cell & Developmental Biology, 2022-3-23

Jeziorski J, Brandt R, Evans JH, Campana W, Kalichman M, Thompson E, Goldstein L, Koch C, Muotri AR

Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity

Cell, 2022-3-17

Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, Kemnitz N, Ih D, Silversmith WM, Zung J, Zlateski A, Tartavull I, Yu SC, Popovych S, Mu S, Wong W, Jordan CS, Castro M, Buchanan J, Bumbarger DJ, Takeno M, Torres R, Mahalingam G, Elabbady L, Li Y, Cobos E, Zhou P, Suckow S, Becker L, Paninski L, Polleux F, Reimer J, Tolias AS, Reid RC, da Costa NM, Seung HS

Local connectivity and synaptic dynamics in mouse and human neocortex

Science, 2022-3-11

Campagnola L, Seeman SC, Chartrand T, Kim L, Hoggarth A, Gamlin C, Ito S, Trinh J, Davoudian P, Radaelli C, Kim MH, Hage T, Braun T, Alfiler L, Andrade J, Bohn P, Dalley R, Henry A, Kebede S, Alice M, Sandman D, Williams G, Larsen R, Teeter C, Daigle TL, Berry K, Dotson N, Enstrom R, Gorham M, Hupp M, Dingman Lee S, Ngo K, Nicovich PR, Potekhina L, Ransford S, Gary A, Goldy J, McMillen D, Pham T, Tieu M, Siverts L, Walker M, Farrell C, Schroedter M, Slaughterbeck C, Cobb C, Ellenbogen R, Gwinn RP, Keene CD, Ko AL, Ojemann JG, Silbergeld DL, Carey D, Casper T, Crichton K, Clark M, Dee N, Ellingwood L, Gloe J, Kroll M, Sulc J, Tung H, Wadhwani K, Brouner K, Egdorf T, Maxwell M, McGraw M, Pom CA, Ruiz A, Bomben J, Feng D, Hejazinia N, Shi S, Szafer A, Wakeman W, Phillips J, Bernard A, Esposito L, D'Orazi FD, Sunkin S, Smith K, Tasic B, Arkhipov A, Sorensen S, Lein E, Koch C, Murphy G, Zeng H, Jarsky T

Make war not love: The neural substrate underlying a state-dependent switch in female social behavior

Neuron, 2022-3-2

Liu M, Kim DW, Zeng H, Anderson DJ

Single Circuit in V1 Capable of Switching Contexts During Movement Using an Inhibitory Population as a Switch

Neural Computation, 2022-2-17

Voina D, Recanatesi S, Hu B, Shea-Brown E, Mihalas S

Single Circuit in V1 Capable of Switching Contexts During Movement Using an Inhibitory Population as a Switch

Neural Computation, 2022-2-17

Voina D, Recanatesi S, Hu B, Shea-Brown E, Mihalas S

Measuring Stimulus-Evoked Neurophysiological Differentiation in Distinct Populations of Neurons in Mouse Visual Cortex

eNeuro, 2022-2-9

Mayner WGP, Marshall W, Billeh YN, Gandhi SR, Caldejon S, Cho A, Griffin F, Hancock N, Lambert S, Lee EK, Luviano JA, Mace K, Nayan C, Nguyen TV, North K, Seid S, Williford A, Cirelli C, Groblewski PA, Lecoq J, Tononi G, Koch C, Arkhipov A.

Cellular resolution anatomical and molecular atlases for prenatal human brains

The Journal of Comparative Neurology, 2022-1-0

Ding SL, Royall JJ, Lesnar P, Facer BAC, Smith KA, Wei Y, Brouner K, Dalley RA, Dee N, Dolbeare TA, Ebbert A, Glass IA, Keller NH, Lee F, Lemon TA, Nyhus J, Pendergraft J, Reid R, Sarreal M, Shapovalova NV, Szafer A, Phillips JW, Sunkin SM, Hohmann JG, Jones AR, Hawrylycz MJ, Hof PR, Ng L, Bernard A, Lein ES

Synaptic connectivity to L2/3 of primary visual cortex measured by two-photon optogenetic stimulation

eLife, 2022-1-21

Hage TA, Bosma-Moody A, Baker CA, Kratz MB, Campagnola L, Jarsky T, Zeng H, Murphy GJ

Cross-modal coherent registration of whole mouse brains

Nature Methods, 2022-1-19

Qu L, Li Y, Xie P, Liu L, Wang Y, Wu J, Liu Y, Wang T, Li L, Guo K, Wan W, Ouyang L, Xiong F, Kolstad AC, Wu Z, Xu F, Zheng Y, Gong H, Luo Q, Bi G, Dong H, Hawrylycz M, Zeng H, Peng H

Dense functional and molecular readout of a circuit hub in sensory cortex

Science, 2022-1-7

Condylis C, Ghanbari A, Manjrekar N, Bistrong K, Yao S, Yao Z, Nguyen TN, Zeng H, Tasic B, Chen JL

Transcriptomic evidence for dense peptidergic networks within forebrains of four widely divergent tetrapods

Current Opinion in Neurobiology, 2021-12-0

Smith SJ

Transcriptional network orchestrating regional patterning of cortical progenitors

Proceedings of the National Academy of Sciences, 2021-12-21

Ypsilanti AR, Pattabiraman K, Catta-Preta R, Golonzhka O, Lindtner S, Tang K, Jones IR, Abnousi A, Juric I, Hu M, Shen Y, Dickel DE, Visel A, Pennachio LA, Hawrylycz M, Thompson CL, Zeng H, Barozzi I, Nord AS, Rubenstein JL.

Cell-type-specific neuromodulation guides synaptic credit assignment in a spiking neural network

Proceedings of the National Academy of Sciences, 2021-12-21

Liu YH, Smith S, Mihalas S, Shea-Brown E, Sümbül U

Structure and function of axo-axonic inhibition

eLife, 2021-12-1

Schneider-Mizell CM, Bodor AL, Collman F, Brittain D, Bleckert A, Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Zhuang J, Nandi A, Hu B, Buchanan J, Takeno MM, Torres R, Mahalingam G, Bumbarger DJ, Li Y, Chartrand T, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, Popovych S, Wong W, Castro M, Jordan CS, Froudarakis E, Becker L, Suckow S, Reimer J, Tolias AS, Anastassiou CA, Seung HS, Reid RC, da Costa NM

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

Nature Cell Biology, 2021-11-23

Börner K, Teichmann SA, Quardokus EM, Gee JC, Browne K, Osumi-Sutherland D, Herr BW 2nd, Bueckle A, Paul H, Haniffa M, Jardine L, Bernard A, Ding SL, Miller JA, Lin S, Halushka MK, Boppana A, Longacre TA, Hickey J, Lin Y, Valerius MT, He Y, Pryhuber G, Sun X, Jorgensen M, Radtke AJ, Wasserfall C, Ginty F, Ho J, Sunshine J, Beuschel RT, Brusko M, Lee S, Malhotra R, Jain S, Weber G.

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