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Publications

Explore publications from the Allen Institute.

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Journal of Immunological Methods

Development of a high-throughput image cytometric screening method as a research tool for immunophenotypic characterization of patient samples from clinical studies

Jan 01, 2024

Samir Patel, James I. McDonald, Hamza Mohammed, Vaishnavi Parthasarathy, Veronica Hernandez, Tyanna Stuckey, Allen H. Lin, Srinivas Koushik Gundimeda, Bo Lin, Julian Reading, Leo Li-Ying Chan

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Nature Immunology

Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment

Nov 01, 2023

Zachary Thomson, Ziyuan He, Elliott Swanson, Katherine Henderson, Cole Phalen, Samir Rachid Zaim, Mark-Phillip Pebworth, Lauren Y. Okada, Alexander T. Heubeck, Charles R. Roll, Veronica Hernandez, Morgan Weiss, Palak C. Genge, Julian Reading, Josephine R. Giles, Sasikanth Manne, Jeanette Dougherty, C. J. Jasen, Allison R. Greenplate, Lynne A. Becker, Lucas T. Graybuck, Suhas V. Vasaikar, Gregory L. Szeto, Adam K. Savage, Cate Speake, Jane H. Buckner, Xiao-Jun Li, Thomas F. Bumol, E. John Wherry, Troy R. Torgerson, Laura A. Vella, Sarah E. Henrickson, Peter J. Skene, Claire E. Gustafson

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Nature Communications

Persistent serum protein signatures define an inflammatory subcategory of long COVID

Jun 09, 2023

Aarthi Talla, Suhas V. Vasaikar, Gregory Lee Szeto, Maria P. Lemos, Julie L. Czartoski, Hugh MacMillan, Zoe Moodie, Kristen W. Cohen, Lamar B. Fleming, Zachary Thomson, Lauren Okada, Lynne A. Becker, Ernest M. Coffey, Stephen C. De Rosa, Evan W. Newell, Peter J. Skene, Xiaojun Li, Thomas F. Bumol, M. Juliana McElrath, Troy R. Torgerson

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Cytometry Part A

Cross‐platform immunophenotyping of human peripheral blood mononuclear cells with four high‐dimensional flow cytometry panels

Jun 01, 2023

Alexander Heubeck, Adam Savage, Katherine Henderson, Charles Roll, Veronica Hernandez, Troy Torgerson, Thomas Bumol, Julian Reading

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eLife

Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq

Apr 09, 2021

Elliott Swanson, Cara Lord, Julian Reading, Alexander T Heubeck, Palak C Genge, Zachary Thomson, Morgan Da Weiss, Xiao-jun Li, Adam K Savage, Richard R Green, Troy R Torgerson, Thomas F Bumol, Lucas T Graybuck, Peter J Skene

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Science Programs at Allen Institute