Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search
impact
people

Marc Takeno

Research Associate Principal

teams /
Allenite

​Marc’s primary role at the Institute is to prepare tissue for large-scale electron microscopy (EM) studies of local cortical circuits. EM tissue preparation and visualization are technically demanding – especially at scale – but the knowledge that the data will be publicly available, as well as helping to define the standard of fine-scale connections in the mouse cortex for Marc, is very rewarding.

Prior to coming to the Allen Institute, Marc managed a light microscopy facility at the University of Washington Department of Bioengineering. Marc earned a Ph.D. in Bioengineering from the University of Washington, and a B.S. from Johns Hopkins University.

back to people and teams
featured contributions
featured media
featured stories
featured events
featured publications

featured events

No articles for the category

featured stories

No articles for the category

featured media

No articles for the category

featured publications

publication / 2025
The synaptic architecture of layer 5 thick tufted excitatory neurons in mouse visual cortex
Nature Neuroscience
publication / 2025
An unsupervised map of excitatory neuron dendritic morphology in the mouse visual cortex
Nature Communications
publication / 2025
CAVE: Connectome Annotation Versioning Engine
Nature Methods
publication / 2025
NEURD offers automated proofreading and feature extraction for connectomics
Nature
publication / 2025
Inhibitory specificity from a connectomic census of mouse visual cortex
Nature
publication / 2025
Functional connectomics reveals general wiring rule in mouse visual cortex
Nature
publication / 2025
Perisomatic ultrastructure efficiently classifies cells in mouse cortex
Nature
publication / 2022
Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity
Cell
publication / 2022
Public Volume Electron Microscopy Data: An Essential Resource to Study the Brain Microvasculature
Frontiers in Cell and Developmental Biology
publication / 2020
A petascale automated imaging pipeline for mapping neuronal circuits with high-throughput transmission electron microscopy
Nature Communications
publication / 2018
Publisher Correction: Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes
Scientific Reports
publication / 2018
Flexible Learning-Free Segmentation and Reconstruction of Neural Volumes
Scientific Reports
publication / 2018
Registration and Alignment Between in vivo Functional and Cytoarchitectonic Maps of Mouse Visual Cortex
Bio-Protocol
publication
Connectomics of predicted Sst transcriptomic types in mouse visual cortex
Nature
we acceleratedevelopcatalyzeimpact

science done differently. shared openly.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings