Stroke

Deep Imaging to Dissect Microvascular Contributions to White Matter Degeneration in Rodent Models of Dementia

May 01, 2023

Stefan Stamenkovic, Yuandong Li, Jack Waters, Andy Shih

Cell Reports

Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex

Oct 12, 2021

Jun Zhuang, Yun Wang, Naveen D. Ouellette, Emily E. Turschak, Rylan S. Larsen, Kevin T. Takasaki, Tanya L. Daigle, Bosiljka Tasic, Jack Waters, Hongkui Zeng, R. Clay Reid

eLife

Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice

Mar 08, 2021

Lawrence Huang, Peter Ledochowitsch, Ulf Knoblich, Jérôme Lecoq, Gabe J. Murphy, R. Clay Reid, Saskia Ej de Vries, Christof Koch, Hongkui Zeng, Michael A. Buice, Jack Waters, Lu Li

eNeuro

The Effect of Inclusion Criteria on the Functional Properties Reported in Mouse Visual Cortex

Feb 01, 2021

Natalia Mesa, Jack Waters, Saskia E. J. de Vries

eLife

Sources of widefield fluorescence from the brain

Nov 06, 2020

Jack Waters

Nature Neuroscience

A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex

Jan 01, 2020

Saskia E. J. de Vries, Jerome A. Lecoq, Michael A. Buice, Peter A. Groblewski, Gabriel K. Ocker, Michael Oliver, David Feng, Nicholas Cain, Peter Ledochowitsch, Daniel Millman, Kate Roll, Marina Garrett, Tom Keenan, Leonard Kuan, Stefan Mihalas, Shawn Olsen, Carol Thompson, Wayne Wakeman, Jack Waters, Derric Williams, Chris Barber, Nathan Berbesque, Brandon Blanchard, Nicholas Bowles, Shiella D. Caldejon, Linzy Casal, Andrew Cho, Sissy Cross, Chinh Dang, Tim Dolbeare, Melise Edwards, John Galbraith, Nathalie Gaudreault, Terri L. Gilbert, Fiona Griffin, Perry Hargrave, Robert Howard, Lawrence Huang, Sean Jewell, Nika Keller, Ulf Knoblich, Josh D. Larkin, Rachael Larsen, Chris Lau, Eric Lee, Felix Lee, Arielle Leon, Lu Li, Fuhui Long, Jennifer Luviano, Kyla Mace, Thuyanh Nguyen, Jed Perkins, Miranda Robertson, Sam Seid, Eric Shea-Brown, Jianghong Shi, Nathan Sjoquist, Cliff Slaughterbeck, David Sullivan, Ryan Valenza, Casey White, Ali Williford, Daniela M. Witten, Jun Zhuang, Hongkui Zeng, Colin Farrell, Lydia Ng, Amy Bernard, John W. Phillips, R. Clay Reid, Christof Koch

Biomedical Optics Express

Dual-plane 3-photon microscopy with remote focusing

Nov 01, 2019

Kevin T. Takasaki, Dmitri Tsyboulski, Jack Waters

PloS One

Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse

Jan 01, 2019

Jack Waters, Eric Lee, Nathalie Gaudreault, Fiona Griffin, Jerome Lecoq, Cliff Slaughterbeck, David Sullivan, Colin Farrell, Jed Perkins, David Reid, David Feng, Nile Graddis, Marina Garrett, Yang Li, Fuhui Long, Chris Mochizuki, Kate Roll, Jun Zhuang, Carol Thompson

PloS One

Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas

Jan 01, 2019

Natalie Weed, Trygve Bakken, Nile Graddis, Nathan Gouwens, Daniel Millman, Michael Hawrylycz, Jack Waters

PLoS computational biology

Visual physiology of the layer 4 cortical circuit in silico

Nov 01, 2018

Anton Arkhipov, Nathan W. Gouwens, Yazan N. Billeh, Sergey Gratiy, Ramakrishnan Iyer, Ziqiang Wei, Zihao Xu, Reza Abbasi-Asl, Jim Berg, Michael Buice, Nicholas Cain, Nuno da Costa, Saskia de Vries, Daniel Denman, Severine Durand, David Feng, Tim Jarsky, Jérôme Lecoq, Brian Lee, Lu Li, Stefan Mihalas, Gabriel K. Ocker, Shawn R. Olsen, R. Clay Reid, Gilberto Soler-Llavina, Staci A. Sorensen, Quanxin Wang, Jack Waters, Massimo Scanziani, Christof Koch

Cell

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality

Jul 12, 2018

Tanya L. Daigle, Linda Madisen, Travis A. Hage, Matthew T. Valley, Ulf Knoblich, Rylan S. Larsen, Marc M. Takeno, Lawrence Huang, Hong Gu, Rachael Larsen, Maya Mills, Alice Bosma-Moody, La' Akea Siverts, Miranda Walker, Lucas T. Graybuck, Zizhen Yao, Olivia Fong, Thuc Nghi Nguyen, Emma Garren, Garreck H. Lenz, Mariya Chavarha, Julie Pendergraft, James Harrington, Karla E. Hirokawa, Julie A. Harris, Philip R. Nicovich, Medea J. McGraw, Douglas R. Ollerenshaw, Kimberly A. Smith, Christopher A. Baker, Jonathan T. Ting, Susan M. Sunkin, Jérôme Lecoq, Michael Z. Lin, Edward S. Boyden, Gabe J. Murphy, Nuno M. da Costa, Jack Waters, Lu Li, Bosiljka Tasic, Hongkui Zeng

Bio-Protocol

Registration and Alignment Between in vivo Functional and Cytoarchitectonic Maps of Mouse Visual Cortex

Feb 20, 2018

Jun Zhuang, Quanxin Wang, Marc Takeno, Jack Waters

Frontiers in Neural Circuits

Neuromodulatory Correlates of Pupil Dilation

Jan 01, 2018

Rylan S. Larsen, Jack Waters

eNeuro

Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines

Oct 01, 2017

Nicholas A. Steinmetz, Christina Buetfering, Jerome Lecoq, Christian R. Lee, Andrew J. Peters, Elina A. K. Jacobs, Philip Coen, Douglas R. Ollerenshaw, Matthew T. Valley, Saskia E. J. de Vries, Marina Garrett, Jun Zhuang, Peter A. Groblewski, Sahar Manavi, Jesse Miles, Casey White, Eric Lee, Fiona Griffin, Joshua D. Larkin, Kate Roll, Sissy Cross, Thuyanh V. Nguyen, Rachael Larsen, Julie Pendergraft, Tanya Daigle, Bosiljka Tasic, Carol L. Thompson, Jack Waters, Shawn Olsen, David J. Margolis, Hongkui Zeng, Michael Hausser, Matteo Carandini, Kenneth D. Harris

eLife

An extended retinotopic map of mouse cortex

Jan 06, 2017

Jun Zhuang, Lydia Ng, Derric Williams, Matthew Valley, Yang Li, Marina Garrett, Jack Waters

Proceedings of the National Academy of Sciences of the United States of America

Inferring cortical function in the mouse visual system through large-scale systems neuroscience

Jul 05, 2016

Michael Hawrylycz, Costas Anastassiou, Anton Arkhipov, Jim Berg, Michael Buice, Nicholas Cain, Nathan W. Gouwens, Sergey Gratiy, Ramakrishnan Iyer, Jung Hoon Lee, Stefan Mihalas, Catalin Mitelut, Shawn Olsen, R. Clay Reid, Corinne Teeter, Saskia de Vries, Jack Waters, Hongkui Zeng, Christof Koch, MindScope

PloS One

Characterization of Channelrhodopsin and Archaerhodopsin in Cholinergic Neurons of Cre-Lox Transgenic Mice

Jan 01, 2016

Tristan Hedrick, Bethanny Danskin, Rylan S. Larsen, Doug Ollerenshaw, Peter Groblewski, Matthew Valley, Shawn Olsen, Jack Waters

PloS One

Optogenetics in Mice Performing a Visual Discrimination Task: Measurement and Suppression of Retinal Activation and the Resulting Behavioral Artifact

Jan 01, 2015

Bethanny Danskin, Daniel Denman, Matthew Valley, Douglas Ollerenshaw, Derric Williams, Peter Groblewski, Clay Reid, Shawn Olsen, Timothy Blanche, Jack Waters

eNeuro

Superficial Bound of the Depth Limit of Two-Photon Imaging in Mouse Brain

Kevin Takasaki, Reza Abbasi-Asl, Jack Waters