Nanosymposium | Insights From the Machine Intelligence From Cortical Networks (MICrONS) Project

• Time: November 15, 2025 | 1:00pm-2:45pm
• Location: NANO003 – SDCC Rm 30
• Allen Institute Presenters: Chi Zhang (NANO003.03), Ben Pedigo (NANO003.04), Bethanny Danskin (NANO003.07)

Open Educational Resources for Neuroscience: What’s Out There and How to Contribute

• Time: November 15, 2025 | 12:00pm-2:00pm
• Location: PDW02 – SDCC Rm 2
• Allen Institute Speaker: Kaitlyn Casimo

Towards a Foundation Model of 3D Neuroanatomy

• Location: PSTR049.01
• Presenter: Geoffrey Schau

Molecular anatomy of locus coeruleus norepinephrine cells

• Location: PSTR040.02/BB3
• Presenters: Polina Kosillo, Yoh Isogai

A state-representation-independent statistical test of the dopamine reward prediction error hypothesis

• Location: PSTR047.01
• Presenter: Lukasz Kusmierz

Neurons Beyond the Textbook: Undergraduate curricular resources leveraging open data from the Allen Institute

• Location: TKP03.20SA
• Presenter: Claire Weichselbaum

Additional Poster

Outreach and usage of Allen Institute cell type taxonomy tools

• Time: 2:00pm-3:30pm
• Location: Hall E, Product Theater #1
• Presenter: Rachel Hostetler

Nanosymposium: AI-Driven Integration and Analysis across Neuroscience Datasets

• Time: November 16, 2025 | 8:00am –10:30am
• Location: NANO012 – SDCC Rm 33
• Allen Institute Presenters: Pamela Baker (NANO012.05), Rohan Gala (NANO012.09)

Minisymposium: Beyond Dissociated Single Cells: High-Resolution Spatial Omics in Aging and Disease

• Time: November 16, 2025 | 9:30am-10:00am
• Location: MIN06 – SDCC Rm 6B
• Allen Institute Presenter: Jennie Close (MIN06.02)

Dual Perspectives: What Is in a Name?: Define the Boundaries of Neuronal Cell Types

• Time: November 16, 2025 | 10:30am-12:00pm
• Location: DUP01 – SDCC Room 6DE
• Allen Institute Speaker: Jeremy Miller

Poster Sessions | 8:00am–12:00pm

Comparative barcoded connectomics in the macaque and mouse visual cortex reveals shared and distinct single-cell organization logic underlying diverse projection patterns

• Location: PSTR095.05
• Presenter: Maryam Majeed

Progress toward high-throughput expansion and light microscopy-based connectomics

• • Location: PSTR095.21
  • Presenter: Kareena Villalobos

Toward high-throughput automated nanoscale TEM imaging of whole mouse hemisphere sections

• Location: PSTR095.18
• Presenter: Kim Gruver

Whole-mouse hemisphere staining for electron microscopy

• Location: PSTR095.18
• Presenter: Mark Takeno

New hardware and software solutions for centimeter-scale nanoconnectomics

• Location: PSTR095.22
• Presenter: Steven Cook

Precise Cutting and Collection of Whole Hemisphere Mouse Sections for Transmission Electron Microscopy

• Location: PSTR095.15
• Presenter: Xiaoyu Lu

Outreach and usage of Allen Institute cell type taxonomy tools

• Location: TKP06.19SU
• Presenter: Rachel Hostetler

An integrated, multiregional, and multimodal cell atlas of Alzheimer’s disease

• Location: PSTR064.01 / D27
• Presenter: Kyle Travaglini

A Spatial Transcriptomic Atlas of the Developing Mouse Brain: Enabling the Study of Cortical GABAergic Interneuron Migration

• Location: PSTR056.15/B14
• Presenter: Remi Mathieu

Tracing Cellular Lifespans in the Brain through Optimal Transport

• Location: PSTR056.08
• Presenter: Yeganeh Marghi

A platform for benchmarking genetically encoded neuromodulator indicators in vivo

• Location: PSTR096.06
• Presenter: Bryan MacLennan

Molecular, morphological, and projection-based organization of non-sensory thalamus

• Location: PSTR088.16
• Presenter: Mathew Summers

A platform for benchmarking genetically encoded neuromodulator indicators in vivo

• Location: PSTR096.06
• Presenter: Kenta Hagihara

MRI-guided electrophysiology of brain-wide inputs to mouse prelimbic cortex

• Location: PSTR088.01
• Presenter: Galen Lynch, Yoni Browning

Poster Sessions | 1:00pm–5:00pm

Distributed context representation in the mouse brain duringsensory task switching

• Location: PSTR137.26
• Presenter: Shawn Olsen, Ethan McBride

Organization of the thalamic reticular nucleus across spatial scales

• Location: LBP027.03
• Presenter: Kevin Cao

Inactivation of mouse orbitofrontal cortex impairs performance in a visual-auditory switching task

• Location: PSTR137.27
• Presenter: Vayle LaFehr

Nanosymposium: Connectomics

• Time: November 17, 2025 | 8:00am-11:30am
• Location: NANO024 – SDCC Rm 33
• Allen Institute Presenter: Sven Dorkenwald (NANO024.10)

Ask Anything Session: Navigating Stem Cell Resources: Models, Tools, and Expert Guidance

• Time: November 17, 2025 | 2:00pm-3:00pm
• Location: AAS03 – SDCC Rm 4
• Allen Institute Speaker: Ru Gunawardane

Poster Sessions | 8:00am–12:00pm

Convolutional Neural Network-based barcode assignment enables robust large-scale barcoded connectomics.

• Location: PSTR197.16
• Presenter: Aixin Zhang

Brain alignment via heteroscedastic prediction of spatial transcriptomics

• Location: PSTR198.11
• Presenter: Ian Convy

Towards label-free prediction of protein channels from structural signals in lightsheet microscopy using a cloud-based workflow

• Location: PSTR197.12
• Presenter: Camilo Laiton

Spikeinterface-gui: a desktop and web app for spike sorting visualization and curation

• Location: PSTR198.15
• Presenter: Alessio Buccino

Specific ensembles of striatal neurons control granular forelimb actions

• Location: LBP038.03
• Presenter: Ines Rodrigues-Vaz

Poster Sessions | 1:00pm–5:00pm

Enhancer AAVs for the treatment of motor deficits in Parkinson’s disease

• Location: PSTR211.01
• Presenter: Alex Fraser

Segmenting High-Dimensional Neural Population Activity into Interpretable Behavioral Units

• Location: PSTR248.02
• Presenter: Shuchen Wu

Automated generation of biophysical neuron models using gradient descent based optimization

• Location: PSTR204.03
• Presenter: Elena Westeinde

A Motor Observatory to Track Diverse Mouse Behavior

• Location: PSTR227.13
• Presenter: Lara Scaria, Helio Rodrigues

Ask Anything Session: Open Science at the Allen Institute

• Time: November 18, 2025 | 12:00pm-1:00pm
• Location: AAS06 – SDCC Rm 4
• Speakers: Carol Thompson, Elysha Fiabane, Su-Yee Lee
• Moderator: Rachel Hostetler

Minisymposium: Evolutionary Neurogenomics: Multiomics-Enabled Insights Into Neural Circuity and Behavior Across Species

• Time: November 18, 2025 | 9:30am-12:00pm
• Location: MIN27 – SDCC Rm 6CF
• Co-chairs: Matthew Schmitz, Morgan Wirthlin

Nanosymposium: Multi-omics

• Time: November 18, 2025 | 8:00am-11:15 am
• Location: NANO036 – SDCC Rm 23A
• Allen Institute Presenters: Michael Kunst (NANO036.05)

Poster Sessions | 8:00am–12:00pm

Enhancer AAV Genetic Tools for Cell Types in the Mouse Brain

• Location: PSTR307.18
• Presenter: Bosiljka Tasic

Transgenic Tools for Cell Type Specific Intersectional Targeting of Cell Types

• Location: PSTR307.19
• Presenter: Sujatha Narayan

A Vulnerable Subtype of Dopaminergic Neurons Drives Early Motor Deficits in Parkinson’s Disease

• Location: LBP072.08 / LBP121
• Presenter: Akira Fushiki

Recent advances in random access projection microscopy

• Location: PSTR308.10
• Presenter: Manni He

Poster Sessions | 1:00pm–5:00pm

Simultaneous functional and transcriptomic profiling of interneurons in mouse visual cortex

• Location: LBP081.08
• Presenter: Paul Olsen

A Whole-Brain Rhesus Macaque Spatial Transcriptomic Atlas

• Location: PSTR364.18
• Presenter: Stephanie Seeman

Epigenetic Landscape of Cell Types in the Adult Mouse Brain

• Location: PSTR364.16/VV15
• Presenter: Marcus Hooper

Measuring input-output transformations of cortical neurons using synaptic imaging

• Location: PSTR319.08/B58
• Presenter: Maedeh Seyedolmohadesin

Bounds on the computational complexity of neurons due to dendritic morphology

• Location: PSTR319.01
• Presenter: Anamika Agrawal

Learning using switching synaptic plasticity rules

• Location: PSTR368.07
• Presenter: Denis Turcu

From point neurons to biophysically detailed networks: A data-driven framework for multi-scale modeling of brain circuits

• Location: PSTR368.09
• Presenter: Beatriz Herrera

Deep-learning-assisted simulation of a cortical circuit: integrating anatomy, physiology, and function

• Location: PSTR340.07 S10
• Presenter: Shinya Ito

Unraveling Central Mechanisms of Classically Conditioned Immune-suppression

• Location: PSTR330.05
• Presenter: Adrien Stanley

Measuring input-output transformations of cortical neurons using synaptic imaging

• Location: PSTR319.08/B58
• Presenter: Jimin Park

Learning using switching synaptic plasticity rules

• Location: PSTR368.07 / ZZ6
• Presenter: Sven Dorkenwald

Minisymposium: Spatial and Molecular Consensus Atlas of Spinal Cord Cell Types in Mouse, Macaque, and Human

• Time: November 19, 2025 | 2:00 PM – 4:30 PM
• Location:  MIN39 – SDCC Rm 29
• Allen Institute Speaker: Trygve Bakken (MIN39.05), Cindy van Velthoven (MIN39.08)

Minisymposium: Neuroimmune Interactions in the Periphery

• Time: November 19, 2025 | 2:00 PM – 4:30 PM
• Location: MIN39 – SDCC Rm 28
• Allen Institute Speaker: Anna Globig (MIN38.07)

Poster Sessions | 8:00am–12:00pm

Building an interoperable, scalable pipeline to yield neuronal resolution axon traces from peta-voxel scale, whole-brain, light-sheet microscopy data

• Location: PSTR418.21
• Presenter: Connor Laughland

Mapping axonal organization and endo-lysosomal burden in Alzheimer’s disease via post-mortem tissue and hiPSC models

• Location: PSTR418.22
• Presenter: Emily Turschak

Characterizing structural diversity of human white matter at single-axon resolution

• Location: PSTR418.20
• Presenter: Wan-Qing Yu

Multimodal Profiling of Basal ganglia Astrocytes within a Cross-species Consensus Atlas

• Location: PSTR417.19
• Presenter: Yuanyuan Fu

Morphological and electrophysiological diversity and specialization in the non-human primate striatum

• Location: PSTR417.16
• Presenter: Xiao-Ping Liu

The accuracy of cell type labels transferred to a MERFISH atlas of the adult mouse brain

• Location:PSTR417.09/TT3
• Presenter: Jack Waters

A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia

• Location: PSTR417.15
• Presenter: Madeleine Hewitt

Multimodal Properties of Glutamatergic Neurons in the Human Neocortex

• Location: PSTR417.20
• Presenter: Rachel Dalley

Bridging function and transcriptomics: Cell types and function in the mouse visual cortex

• Location: PSTR393.07
• Presenter: Zobeiri Omid

Co-variation between molecular expression, physiology, morphology and spatial location in mouse basal ganglia neurons

• Location: PSTR417.18
• Presenter: Agata Budzillo

A cellular-resolution spatial transcriptomic atlas of the marmoset subcortex

• Location: PSTR417.17, TT11
• Presenter: Meghan Turner

Poster Sessions | 1:00pm–5:00pm

Allen Institute Taxonomy (AIT): a new standard for cell type taxonomies

• Location: PSTR477.02/UU20
• Presenter: Jeremy Miller

Brain-wide Survey of Mouse Transcriptomic Cell Types Activated by Acute Psilocybin and Ketamine Injection

• Location: PSTR467.09
• Presenter: Dong-Wook Kim

An Operational Framework for Rapid, Open-Access Sharing of BICAN Human OMICS Data

• Location: PSTR477.01, UU19
• Presenter: Carol Thompson

Managing Metadata Standards in a Large Consortium

• Location: PSTR477.03
• Presenter: Patrick Ray

Cross species enhancer codes across neural cell types

• Location: PSTR475.13
• Presenter: Saroja Somasundaram

Conserved and Divergent Neuronal Identities in the Medulla and Spinal Cord of the Mouse CNS

• Location: PSTR475.22
• Presenter: Jingyi Xie

Simulations of cortical circuits across the cortical hierarchy

• Location: PSTR451.13/S9
• Presenter: Laura Green

Bridging function and transcriptomics: Cell types and function in the mouse visual cortex

• Location: PSTR475.09
• Presenter: Hannah Schryver

Cell-type-specific changes in psilocybin-induced psychedelics states

• Location: PSTR467.10
• Presenter: Yiliu Wang

A ground truth dataset for electrophysiology-based cell type classification in the basal ganglia and midbrain

• Location: PSTR453.09
• Presenter: Anna Lakunina