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Bio:
Uygar Sümbül joined the Allen Institute as an Assistant Investigator in 2017. His current research at the Institute focuses on the modeling and analysis of neuronal cell type identity based on genetic, anatomical, and physiological data. Previously, Uygar held postdoctoral positions in Sebastian Seung’s lab at MIT, and Liam Paninski’s lab at Columbia University. During these appointments, he developed machine learning methods for multi-modal classification of cell types, and for segmenting individual neurons in multispectral images of the nervous tissue. In particular, his research demonstrated a submicron reproducibility in the anatomy of mouse retinal neurons, and the existence of a consistent mapping between anatomical and molecular definitions of cell types. Uygar received a Bachelor’s degree from Bilkent University (Ankara, Turkey). He earned his PhD in Electrical Engineering and Mathematics from Stanford University, where he studied time-series models of dynamic magnetic resonance imaging.
Research Focus:
Nature Communications
Apr 12, 2023
Ian Covert, Rohan Gala, Tim Wang, Karel Svoboda, Uygar Sümbül, Su-In Lee
Cell Reports
Nov 08, 2022
Anirban Nandi, Thomas Chartrand, Werner Van Geit, Anatoly Buchin, Zizhen Yao, Soo Yeun Lee, Yina Wei, Brian Kalmbach, Brian Lee, Ed Lein, Jim Berg, Uygar Sümbül, Christof Koch, Bosiljka Tasic, Costas A. Anastassiou
Proceedings of the National Academy of Sciences of the United States of America
Dec 21, 2021
Yuhan Helena Liu, Stephen Smith, Stefan Mihalas, Eric Shea-Brown, Uygar Sümbül
Nature Computational Science
Feb 01, 2021
Rohan Gala, Agata Budzillo, Fahimeh Baftizadeh, Jeremy Miller, Nathan Gouwens, Anton Arkhipov, Gabe Murphy, Bosiljka Tasic, Hongkui Zeng, Michael Hawrylycz, Uygar Sümbül
Cell
Nov 12, 2020
Nathan W. Gouwens, Staci A. Sorensen, Fahimeh Baftizadeh, Agata Budzillo, Brian R. Lee, Tim Jarsky, Lauren Alfiler, Katherine Baker, Eliza Barkan, Kyla Berry, Darren Bertagnolli, Kris Bickley, Jasmine Bomben, Thomas Braun, Krissy Brouner, Tamara Casper, Kirsten Crichton, Tanya L. Daigle, Rachel Dalley, Rebecca A. de Frates, Nick Dee, Tsega Desta, Samuel Dingman Lee, Nadezhda Dotson, Tom Egdorf, Lauren Ellingwood, Rachel Enstrom, Luke Esposito, Colin Farrell, David Feng, Olivia Fong, Rohan Gala, Clare Gamlin, Amanda Gary, Alexandra Glandon, Jeff Goldy, Melissa Gorham, Lucas Graybuck, Hong Gu, Kristen Hadley, Michael J. Hawrylycz, Alex M. Henry, DiJon Hill, Madie Hupp, Sara Kebede, Tae Kyung Kim, Lisa Kim, Matthew Kroll, Changkyu Lee, Katherine E. Link, Matthew Mallory, Rusty Mann, Michelle Maxwell, Medea McGraw, Delissa McMillen, Alice Mukora, Lindsay Ng, Lydia Ng, Kiet Ngo, Philip R. Nicovich, Aaron Oldre, Daniel Park, Hanchuan Peng, Osnat Penn, Thanh Pham, Alice Pom, Zoran Popović, Lydia Potekhina, Ramkumar Rajanbabu, Shea Ransford, David Reid, Christine Rimorin, Miranda Robertson, Kara Ronellenfitch, Augustin Ruiz, David Sandman, Kimberly Smith, Josef Sulc, Susan M. Sunkin, Aaron Szafer, Michael Tieu, Amy Torkelson, Jessica Trinh, Herman Tung, Wayne Wakeman, Katelyn Ward, Grace Williams, Zhi Zhou, Jonathan T. Ting, Anton Arkhipov, Uygar Sümbül, Ed S. Lein, Christof Koch, Zizhen Yao, Bosiljka Tasic, Jim Berg, Gabe J. Murphy, Hongkui Zeng
Current Opinion in Neurobiology
Aug 01, 2020
Stephen J. Smith, Michael Hawrylycz, Jean Rossier, Uygar Sümbül
Neuron
May 20, 2020
Daniel Maxim Iascone, Yujie Li, Uygar Sümbül, Michael Doron, Hanbo Chen, Valentine Andreu, Finola Goudy, Heike Blockus, Larry F. Abbott, Idan Segev, Hanchuan Peng, Franck Polleux
eLife
Nov 11, 2019
Stephen J. Smith, Uygar Sümbül, Lucas T. Graybuck, Forrest Collman, Sharmishtaa Seshamani, Rohan Gala, Olga Gliko, Leila Elabbady, Jeremy A. Miller, Trygve E. Bakken, Jean Rossier, Zizhen Yao, Ed Lein, Hongkui Zeng, Bosiljka Tasic, Michael Hawrylycz