Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search
impact
people

Jack Waters

Associate Director, Imaging

teams /
Allenite

Jack Waters is an Associate Investigator in the Neural Coding group. He leads a team who investigate the cellular and circuit mechanisms underlying changes in cortical physiology with behavior. Before joining the Allen Institute for Brain Science, he held postdoctoral positions at Stanford University and the Max Planck Institute for Medical Research in Heidelberg, Germany, and was an Assistant Professor in the Department of Physiology at Northwestern University in Chicago. Previous research includes pioneering the combination of electrophysiology and 2-photon imaging techniques to study cells and circuits in intact rodents and examining how ongoing synaptic activity modulates the excitability of neocortical pyramidal neurons in vivo. He also developed the application of optogenetics to control the release of acetylcholine in neocortex and established that nicotinic acetylcholine receptors play a large role in shaping the effects of acetylcholine on neocortical pyramidal neurons. Waters holds a BSc in Biochemistry from the University of York and a PhD in Pharmacology from University College London.

back to people and teams
featured contributions
featured media
featured stories
featured events
featured publications

featured events

No articles for the category

featured stories

news
Scientists complete first drafts of developing mammalian brain cell atlases
New research reveals how early brains form and the critical periods that could help diagnose and treat brain disease.

featured media

No articles for the category

featured publications

publication / 2025
Three-photon microscopy: an emerging technique for deep intravital brain imaging
Nature Reviews. Neuroscience
publication / 2025
Impaired capillary-venous drainage contributes to gliosis and demyelination in mouse white matter during aging
Nature Neuroscience
publication / 2025
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
Cell
publication / 2025
Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits
Neuron
publication / 2025
A large field of view 2- and 3-photon microscope
Light, Science & Applications
publication / 2024
Integrated multimodal cell atlas of Alzheimer's disease
Nature Neuroscience
publication / 2023
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Nature
publication / 2023
Signature morphoelectric properties of diverse GABAergic interneurons in the human neocortex
Science (New York, N.Y.)
publication / 2023
Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
Science (New York, N.Y.)
publication / 2023
Deep Imaging to Dissect Microvascular Contributions to White Matter Degeneration in Rodent Models of Dementia
Stroke
publication / 2021
Laminar distribution and arbor density of two functional classes of thalamic inputs to primary visual cortex
Cell Reports
publication / 2021
Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice
eLife
publication / 2021
The Effect of Inclusion Criteria on the Functional Properties Reported in Mouse Visual Cortex
eNeuro
publication / 2020
Sources of widefield fluorescence from the brain
eLife
publication / 2020
Superficial Bound of the Depth Limit of Two-Photon Imaging in Mouse Brain
eNeuro
publication / 2020
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex
Nature Neuroscience
publication / 2019
Dual-plane 3-photon microscopy with remote focusing
Biomedical Optics Express
publication / 2019
Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas
PloS One
publication / 2019
Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse
PloS One
publication / 2018
Visual physiology of the layer 4 cortical circuit in silico
PLoS computational biology
publication / 2018
A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality
Cell
publication / 2018
Registration and Alignment Between in vivo Functional and Cytoarchitectonic Maps of Mouse Visual Cortex
Bio-Protocol
publication / 2018
Neuromodulatory Correlates of Pupil Dilation
Frontiers in Neural Circuits
publication / 2017
Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines
eNeuro
publication / 2017
An extended retinotopic map of mouse cortex
eLife
publication / 2016
Inferring cortical function in the mouse visual system through large-scale systems neuroscience
Proceedings of the National Academy of Sciences of the United States of America
publication / 2016
Characterization of Channelrhodopsin and Archaerhodopsin in Cholinergic Neurons of Cre-Lox Transgenic Mice
PloS One
publication / 2015
Optogenetics in Mice Performing a Visual Discrimination Task: Measurement and Suppression of Retinal Activation and the Resulting Behavioral Artifact
PloS One
we acceleratedevelopcatalyzeimpact

science done differently. shared with the world.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings