Skip to main content
impact
about
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
overview
all news
explore the latest news
podcast
the human stories behind discovery
sign up for our newsletter
stay connected to our science
events
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
impact
back to menu
team science
our story
explore our impact
careers and opportunities
join us
open science
sharing science to speed discovery
open science week
celebrating open science
team science
people & teams
discovery is a team effort
allenites
the people who make our work possible
advisors
their input shapes our science
board of directors
they help us fulfill our mission
shanahan foundation fellowship
at the interface of data and neuroscience
next generation leaders
fostering emerging leaders in bioscience
research
back to menu
overview
our approach
science at the scale of greatest impact
publications
explore our publications
open science
sharing science to speed discovery
science accelerators
brain science
building a blueprint of the brain
cell science
understanding how cells become organs
neural dynamics
revealing the brain’s hidden algorithms
immunology
creating the ultimate immune system reference
synthetic biology
seattle hub for synthetic biology
education
back to menu
overview
science education
science is for everyone
open science
sharing science speeds discovery
engagement
education resources
real science. real skills.
field trips
experience science where it happens
educator development
empowering educators
news
back to menu
overview
all news
explore the latest news
podcast
the human stories behind discovery
newsletter
stay connected to our science
events
back to menu
overview
all events
public engagement, workshops, seminars and more
conferences
connect with us
science resources
back to menu
science resources
allencell.org
allenimmunology.org
allenneuraldynamics.org
brain-bican.org
brain-map.org
microns-explorer.org
search

publications

explore publications from the allen institute

latest publications

2026
2025
2024
2023
2022
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004
Brain and Consciousness
Brain Science
Cell Science
Education
Immunology
Neural Dynamics
Seattle Hub Team
Shanahan Fellowship
Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
publication / 2021
A Course-Based Research Experience Using the Allen Brain Map: From Research Question to Poster Session
Journal of undergraduate neuroscience education: JUNE: a publication of FUN, Faculty for Undergraduate Neuroscience
Brain Science
MindScope
Kaitlyn Casimo
publication / 2021
A Multisubcellular Compartment Model of AMPA Receptor Trafficking for Neuromodulation of Hebbian Synaptic Plasticity
Frontiers in Synaptic Neuroscience
Brain Science
MindScope
Stefan Mihalas
publication / 2021
Comprehensive Analysis of Long-Range Connectivity from and to the Posterior Parietal Cortex of the Mouse
Cerebral Cortex (New York, N.Y.: 1991)
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Computational Models of Interoception and Body Regulation
Trends in Neurosciences
Brain Science
MindScope
Christof Koch
publication / 2021
Multi-Scale Light-Sheet Fluorescence Microscopy for Fast Whole Brain Imaging
Frontiers in Neuroanatomy
Brain Science
MindScope
This is some text inside of a div block.
publication / 2021
Rodent Area Prostriata Converges Multimodal Hierarchical Inputs and Projects to the Structures Important for Visuomotor Behaviors
Frontiers in Neuroscience
Brain Science
MindScope
Song-Lin Ding
publication / 2021
The Delayed Neuropathological Consequences of Traumatic Brain Injury in a Community-Based Sample
Frontiers in Neurology
Brain Science
MindScope
C. Dirk Keene
publication / 2020
Common cell type nomenclature for the mammalian brain
eLife
Brain Science
MindScope
Bosiljka Tasic
Forrest Collman
Hongkui Zeng
preprint / 2020
Automated hiPSC culture and sample preparation for 3D live cell microscopy
Cell Science
Antoine Borensztejn
preprint / 2020
Robust integrated intracellular organization of the human iPS cell: where, how much, and how variable?
Cell Science
Ritvik Vasan
Antoine Borensztejn
Sara Carlson
publication / 2020
CaMKIIα-Positive Interneurons Identified via a microRNA-Based Viral Gene Targeting Strategy
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
Brain Science
MindScope
Jim Berg
publication / 2020
A ventrolateral medulla-midline thalamic circuit for hypoglycemic feeding
Nature Communications
Brain Science
MindScope
This is some text inside of a div block.
publication / 2020
A community-based transcriptomics classification and nomenclature of neocortical cell types
Nature Neuroscience
Brain Science
MindScope
Rafael Yuste
Michael Hawrylycz
Kenta Hagihara
publication / 2020
A standardized head-fixation system for performing large-scale, in vivo physiological recordings in mice
Journal of Neuroscience Methods
Brain Science
MindScope
Neural Dynamics
This is some text inside of a div block.
publication / 2020
Linking axon morphology to gene expression: a strategy for neuronal cell-type classification
Current Opinion in Neurobiology
Brain Science
MindScope
This is some text inside of a div block.
publication / 2020
Network structure of the mouse brain connectome with voxel resolution
Science Advances
Brain Science
MindScope
This is some text inside of a div block.
publication / 2020
Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
Cell
Brain Science
MindScope
Fahimeh Baftizadeh
Agata Budzillo
Tim Jarsky
publication / 2020
SpikeInterface, a unified framework for spike sorting
eLife
Brain Science
MindScope
This is some text inside of a div block.
Previous
load more publications

No results found, try reducing your search parameters.

we acceleratedevelopcatalyzeimpact

science done differently. shared with the world.

explore our accelerators

brain science

Mapping every cell, connection, and circuit in the brain—openly shared with the world.

cell science

Decoding how cells become tissues, then programming that knowledge into powerful new research tools.

neural dynamics

Revealing the brain's hidden algorithms that transform neural activity into real-world behavior.

immunology

Creating the deepest open reference for the healthy human immune system ever built.

synthetic biology

Engineering cells to record their own histories, transforming how we understand disease over time.

research

Big questions, open answers, and science built to be shared.

education

Inspiring the next generation of scientists through open science resources.

impact

Our science is empowering researchers and advancing health worldwide.
advancing science through open, collaborative research
Get the allen institute newsletter
Stay informed on the latest breakthroughs in neuroscience, bioscience, and AI-driven research.
allen institute
impactpeople & teamscareers & opportunitiesalumnihistory & founder
science resources
allencell.orgallenimmunology.orgallenneuraldynamics.orgbrain-bican.orgbrain-map.orgmicrons-explorer.org
research
brain sciencecell scienceneural dynamicsimmunologysynthetic biologypublications
education
science educationfield tripsprofessional developmenteducation resources
quick links
newseventsopen sciencepodcastscience resourceshuman brain donationvisit uscontact
follow us/

allen institute, 615 Westlake Ave North, Seattle, WA 98109 +12065487055

© 0000 allen institute. all rights reserved.
privacy policyterms of usecitation policyemployee portalpolicy & compliancecookie settings