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Christof Koch

Meritorious Investigator

teams /
Allenite

Christof Koch is a Meritorious Investigator at the Allen Institute.

Christof received his baccalaureate from the Lycée Descartes in Rabat, Morocco, his B.S. and M.S. in physics from the University of Tübingen in Germany and his Ph.D. from the Max-Planck Institute for biological Cybernetics in 1982. Subsequently, he spent four years as a postdoctoral fellow in the Artificial Intelligence Laboratory and the Brain and Cognitive Sciences Department at the Massachusetts Institute of Technology. From 1987 until 2013, Koch was a professor at the California Institute of Technology (Caltech) in Pasadena, from his initial appointment as Assistant Professor, Division of Biology and Division of Engineering and Applied Sciences in 1986, to his final position as Lois and Victor Troendle Professor of Cognitive & Behavioral Biology. See here for Christof’s academic pedigree and his students. Christof joined the Allen Institute for Brain Science as Chief Scientific Officer in 2011 and became President in 2015.

Christof’s passion are neurons – the atoms of perception, memory, behavior and consciousness – their diverse shapes, electrical behaviors, and their computational function within the mammalian brain, in particular in neocortex. The Allen Institute for Brain Science is engaged in a major effort to identify all the different types of neurons in the brains of mice and humans – the cell census effort. See the papers below.

Christof discovered that in vivo cortical neurons do not integrate over large number of small inputs given their spiking variability, how neurons can multiply, the relationship between intra- and extra-cellular potential, and how this gives rise to the local field potential and the large-scale current sinks and sources and how weak extracellular fields can entrain spiking activity via ephaptic effects. He postulated the attentional saliency map hypothesis for biological and computer vision according to which one or more topographic organized spatial maps summarize bottom-up salient information in the visual system, he co-discovered, with Itzhak Fried, an high-level, invariant and abstract single neuron representation of familiar individuals and objects in the human medial temporal lobe (the so-called “Jennifer Aniston” or concept neurons) and developed the ‘continuous flashed suppression’ masking technique. In collaboration with Francis Crick, he initiated the modern search for the neuronal correlates of consciousness, a systematic experimental program to identify the minimal bio-physical mechanisms jointly sufficient for any one specific conscious percept. In collaboration with Giulio Tononi, he co-developed the Integrated Information Theory of consciousness.

Christof writings and interests integrate theoretical, computational and experimental neuroscience with philosophy and contemporary trends, in particular artificial intelligence. His latest book, The Feeling of Life Itself – Why Consciousness is Everywhere But Can’t be Computed, was published by MIT Press in Autumn of 2019.

His previous book, Consciousness: Confessions of a Romantic Reductionist, blends science and memoir to explore topics in discovering the roots of consciousness. Stemming in part from a long-standing collaboration with the late Nobel Laureate Francis Crick, Christof authored the book The Quest for Consciousness: A Neurobiological Approach. Koch also authored the technical books Biophysics of Computation: Information Processing in Single Neurons and Methods in Neuronal Modeling: From Ions to Networks, and served as editor for several books on neural modeling and information processing.

Visit Christof’s Wikipedia page.

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featured stories

video
What extreme experience can teach us about consciousness
Christof Koch speaks to a global audience about psychedelics, unresponsive patients, and the unsolved mystery of conscious experience
news
Landmark experiment sheds new light on the origins of consciousness
Findings suggest it may be about sensory processing and perception, with possible implications for diagnosing and treating comas or vegetative states.
video
The World's Observatory of the Mind | OpenScope
Great questions can come from anywhere. OpenScope is an open platform for high-throughput and reproducible neurophysiology.

featured media

media / WBUR
How does the brain love and hate?
Consciousness is how we are able to feel, dream and imagine. And yet — scientists haven't figured out how consciousness definitively works.
media / BBC
We feel it in our bones': Can a machine ever love you?
Artificial intelligence can write you a passable love poem and some people even have romantic feelings towards it. But is the feeling mutual?
media / Popular Mechanics
🔒 Popular Mechanics: Scientists Are Gifting AI the Final Ingredient for Consciousness—And It Could Trigger the Singularity
A tech company is working on creating “micro-emotions” within AI to see how it effects their behavior, but not everyone buys into the idea.

featured publications

publication / 2025
Evidence from spatial transcriptomics for the mosaic hypothesis and pure cell types in the cortex
Cell Reports
publication / 2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience
publication / 2024
Cell-class-specific electric field entrainment of neural activity
Neuron
publication / 2024
Testing the Conjecture That Quantum Processes Create Conscious Experience
Entropy (Basel, Switzerland)
publication / 2024
Thalamic feedback shapes brain responses evoked by cortical stimulation in mice and humans
bioRxiv
preprint / 2024
Deciphering neuronal variability across states reveals dynamic sensory encoding
preprint / 2024
Ultra-high density electrodes improve detection, yield, and cell type identification in neuronal recordings
publication / 2024
Behavioral strategy shapes activation of the Vip-Sst disinhibitory circuit in visual cortex
Neuron
publication / 2024
Backward masking in mice requires visual cortex
Nature Neuroscience
publication / 2023
Morphoelectric and transcriptomic divergence of the layer 1 interneuron repertoire in human versus mouse neocortex
Science (New York, N.Y.)
publication / 2023
Uncovering circuit mechanisms of current sinks and sources with biophysical simulations of primary visual cortex
eLife
publication / 2023
Sharing neurophysiology data from the Allen Brain Observatory
eLife
publication / 2023
Cortico-thalamo-cortical interactions modulate electrically evoked EEG responses in mice
eLife
publication / 2023
BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
Nature Methods
publication / 2023
Measuring Consciousness in the Intensive Care Unit
Neurocritical Care
publication / 2023
Do not go gently into that good night: The dying brain and its paradoxically heightened electrical activity
Proceedings of the National Academy of Sciences of the United States of America
preprint / 2023
Stimulus novelty uncovers coding diversity in visual cortical circuits
publication / 2023
Regional and cell-type-specific afferent and efferent projections of the mouse claustrum
Cell Reports
publication / 2023
An adversarial collaboration protocol for testing contrasting predictions of global neuronal workspace and integrated information theory
PLOS ONE
publication / 2023
Influence of claustrum on cortex varies by area, layer, and cell type
Neuron
publication / 2023
A survey of neurophysiological differentiation across mouse visual brain areas and timescales
Frontiers in Computational Neuroscience
publication / 2022
Multi-modal characterization and simulation of human epileptic circuitry
Cell Reports
publication / 2022
Simulations of cortical networks using spatially extended conductance-based neuronal models
The Journal of Physiology
publication / 2022
Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types
Cell Reports
publication / 2022
Next-generation brain observatories
Neuron
publication / 2022
Multi-regional module-based signal transmission in mouse visual cortex
Neuron
publication / 2022
Brain organoids, consciousness, ethics and moral status
Seminars in Cell & Developmental Biology
publication / 2022
IIT, half masked and half disfigured
The Behavioral and Brain Sciences
publication / 2022
Local connectivity and synaptic dynamics in mouse and human neocortex
Science (New York, N.Y.)
publication / 2022
Measuring Stimulus-Evoked Neurophysiological Differentiation in Distinct Populations of Neurons in Mouse Visual Cortex
eNeuro
publication / 2021
Removing independent noise in systems neuroscience data using DeepInterpolation
Nature Methods
publication / 2021
Human neocortical expansion involves glutamatergic neuron diversification
Nature
publication / 2021
Morphological diversity of single neurons in molecularly defined cell types
Nature
publication / 2021
Comparative cellular analysis of motor cortex in human, marmoset and mouse
Nature
publication / 2021
Signature morpho-electric, transcriptomic, and dendritic properties of human layer 5 neocortical pyramidal neurons
Neuron
publication / 2021
Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans
eLife
publication / 2021
Adaptation supports short-term memory in a visual change detection task
PLoS computational biology
publication / 2021
Perceptual awareness negativity: a physiological correlate of sensory consciousness
Trends in Cognitive Sciences
publication / 2021
Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
eLife
publication / 2021
Survey of spiking in the mouse visual system reveals functional hierarchy
Nature
publication / 2021
Relationship between simultaneously recorded spiking activity and fluorescence signal in GCaMP6 transgenic mice
eLife
publication / 2021
Computational Models of Interoception and Body Regulation
Trends in Neurosciences
publication / 2020
Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells
Cell
publication / 2020
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
PLoS computational biology
publication / 2020
Distinct Transcriptomic Cell Types and Neural Circuits of the Subiculum and Prosubiculum along the Dorsal-Ventral Axis
Cell Reports
publication / 2020
The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas
Cell
publication / 2020
Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex
Neuron
publication / 2020
Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons
Nature Communications
publication / 2020
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex
Nature Neuroscience
publication / 2019
Hierarchical organization of cortical and thalamic connectivity
Nature
publication / 2019
Neural precursors of decisions that matter-an ERP study of deliberate and arbitrary choice
eLife
publication / 2019
Conserved cell types with divergent features in human versus mouse cortex
Nature
publication / 2019
Classification of electrophysiological and morphological neuron types in the mouse visual cortex
Nature Neuroscience
publication / 2019
High-density extracellular probes reveal dendritic backpropagation and facilitate neuron classification
Journal of Neurophysiology
publication / 2018
h-Channels Contribute to Divergent Intrinsic Membrane Properties of Supragranular Pyramidal Neurons in Human versus Mouse Cerebral Cortex
Neuron
publication / 2018
Visual physiology of the layer 4 cortical circuit in silico
PLoS computational biology
publication / 2018
Shared and distinct transcriptomic cell types across neocortical areas
Nature
publication / 2018
Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex
eLife
publication / 2018
Challenges and opportunities for large-scale electrophysiology with Neuropixels probes
Current Opinion in Neurobiology
publication / 2018
A robust ex vivo experimental platform for molecular-genetic dissection of adult human neocortical cell types and circuits
Scientific Reports
publication / 2018
Human single neuron activity precedes emergence of conscious perception
Nature Communications
publication / 2018
Preparation of Acute Brain Slices Using an Optimized N-Methyl-D-glucamine Protective Recovery Method
Journal of Visualized Experiments: JoVE
publication / 2018
Systematic generation of biophysically detailed models for diverse cortical neuron types
Nature Communications
publication / 2018
Generalized leaky integrate-and-fire models classify multiple neuron types
Nature Communications
publication / 2018
BioNet: A Python interface to NEURON for modeling large-scale networks
PloS One
publication / 2017
Fully integrated silicon probes for high-density recording of neural activity
Nature
publication / 2017
Are the Neural Correlates of Consciousness in the Front or in the Back of the Cerebral Cortex? Clinical and Neuroimaging Evidence
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
publication / 2017
A robot for high yield electrophysiology and morphology of single neurons in vivo
Nature Communications
publication / 2017
Organization of the connections between claustrum and cortex in the mouse
The Journal of Comparative Neurology
publication / 2017
Persistent Single-Neuron Activity during Working Memory in the Human Medial Temporal Lobe
Current biology: CB
publication / 2017
From Maxwell's equations to the theory of current-source density analysis
The European Journal of Neuroscience
publication / 2017
Spatial Organization of Chromatic Pathways in the Mouse Dorsal Lateral Geniculate Nucleus
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience
publication / 2017
Scene-selective coding by single neurons in the human parahippocampal cortex
Proceedings of the National Academy of Sciences of the United States of America
publication / 2017
Are we underestimating the richness of visual experience?
Neuroscience of Consciousness
publication / 2017
A Computational Analysis of the Function of Three Inhibitory Cell Types in Contextual Visual Processing
Frontiers in Computational Neuroscience
publication / 2016
Big Science, Team Science, and Open Science for Neuroscience
Neuron
publication / 2016
Comprehensive cellular-resolution atlas of the adult human brain
The Journal of Comparative Neurology
publication / 2016
Reevaluating excess success in psychological science
Psychonomic Bulletin & Review
publication / 2016
The Computational Properties of a Simplified Cortical Column Model
PLoS computational biology
publication / 2016
Worldwide initiatives to advance brain research
Nature Neuroscience
publication / 2016
Inferring cortical function in the mouse visual system through large-scale systems neuroscience
Proceedings of the National Academy of Sciences of the United States of America
publication / 2016
Integrated information theory: from consciousness to its physical substrate
Nature Reviews. Neuroscience
publication / 2016
Neural correlates of consciousness: progress and problems
Nature Reviews. Neuroscience
publication / 2016
Effects of Chronic Sleep Restriction during Early Adolescence on the Adult Pattern of Connectivity of Mouse Secondary Motor Cortex
eNeuro
publication / 2016
Adult mouse cortical cell taxonomy revealed by single cell transcriptomics
Nature Neuroscience
publication / 2015
Canonical genetic signatures of the adult human brain
Nature Neuroscience
publication / 2015
Neurodata Without Borders: Creating a Common Data Format for Neurophysiology
Neuron
publication / 2015
A Biological Imitation Game
Cell
publication / 2015
Local Field Potentials Encode Place Cell Ensemble Activation during Hippocampal Sharp Wave Ripples
Neuron
publication / 2015
Emergence of Slow-Switching Assemblies in Structured Neuronal Networks
PLoS computational biology
publication / 2015
Cell type- and activity-dependent extracellular correlates of intracellular spiking
Journal of Neurophysiology
publication / 2015
Automated High-Throughput Characterization of Single Neurons by Means of Simplified Spiking Models
PLoS computational biology
publication / 2015
Consciousness: here, there and everywhere?
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences
publication / 2015
Ephaptic coupling to endogenous electric field activity: why bother?
Current Opinion in Neurobiology
publication / 2015
Physiology of layer 5 pyramidal neurons in mouse primary visual cortex: coincidence detection through bursting
PLoS computational biology
publication / 2015
Quantification and classification of neuronal responses in kernel-smoothed peristimulus time histograms
Journal of Neurophysiology
publication / 2014
Evolution of integrated causal structures in animats exposed to environments of increasing complexity
PLoS computational biology
publication / 2014
Multisensory integration in complete unawareness: evidence from audiovisual congruency priming
Psychological Science
publication / 2014
Revealing cell assemblies at multiple levels of granularity
Journal of Neuroscience Methods
publication / 2014
Single-cell responses to face adaptation in the human medial temporal lobe
Neuron
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