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people

Marina Garrett

Assistant Investigator

teams /
Allenite

Marina joined the Allen Institute as a Scientist in 2014 and has contributed to the development and evolution of the Allen Brain Observatory. In her initial work as part of Shawn Olsen’s team, she designed and conducted experiments combining in vivo 2-photon imaging with visually guided behavioral tasks to evaluate feasibility for incorporation into the Allen Brain Observatory pipeline. Results from this work demonstrated that VIP inhibitory neurons are strongly modulated by stimulus novelty.

As a co-lead of the Visual Behavior 2P project, she helped to coordinate the efforts of a multi-disciplinary team to produce a large-scale standardized dataset that allows investigation of the influence of experience, expectation, and task engagement on neural activity in excitatory and inhibitory neurons in the visual cortex (brain-map.org/explore/circuits/visual-behavior-2p). A key discovery resulting from this dataset is that novelty uncovers functional diversity within visual cortical circuits.

In her current role as an Assistant Investigator, Marina leads a team of scientists and engineers that work collaboratively to design, curate, analyze, interpret, and share neurophysiological datasets. Current efforts are aimed at experiments combining longitudinal 2-photon calcium imaging during learning with spatial transcriptomics to map the function of genetically defined cell types.

Prior to joining the Allen Institute, Marina received her PhD from UCSD. Her graduate work in Ed Callaway’s lab at the Salk Institute investigated the functional organization of the mouse visual cortex through a combination of 2-photon calcium imaging, intrinsic signal imaging, and viral tracing.

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featured publications

publication / 2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience
publication / 2024
Behavioral strategy shapes activation of the Vip-Sst disinhibitory circuit in visual cortex
Neuron
preprint / 2023
Coordinated changes in a cortical circuit sculpt effects of novelty on neural dynamics
preprint / 2023
Stimulus novelty uncovers coding diversity in visual cortical circuits
publication / 2022
The geometry of representational drift in natural and artificial neural networks
PLoS computational biology
publication / 2021
Survey of spiking in the mouse visual system reveals functional hierarchy
Nature
publication / 2020
Experience shapes activity dynamics and stimulus coding of VIP inhibitory cells
eLife
publication / 2020
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex
Nature Neuroscience
publication / 2019
Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse
PloS One
publication / 2017
Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines
eNeuro
publication / 2017
An extended retinotopic map of mouse cortex
eLife
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