Scientific Training and Tutorials

NULL

Scientific Training and Tutorials

Webinars, methods, guides, lectures, and tools for accessing and using open science resources from the Allen Institute

Learn to use our open tools, data & resources

Looking for resources for educators and students? Access the Education Materials Library.

Explore All Science Resources

Filter and Sort

- Video
Allen Brain Cell (ABC) Atlas | Tutorial
Get an overview of the Allen Brain Cell (ABC) Atlas platform, detailing the methodologies and technologies used to classify and understand the diversity of cell types in the brain.
- Video
Allen Mouse Brain Atlas | Tutorial
The Allen Mouse Brain Atlas is a comprehensive, high-resolution atlas of gene expression in the adult mouse brain.
- Video
MapMyCells | Tutorial
With MapMyCells, scientists can discover what cell types their transcriptomics and spatial data corresponds
- Video
Allen Cell Segmenter | Tutorial
The goal of the Allen Cell Segmenter was to extract the most high-quality and biologically informative segmentations in 3d images.
- Video
The Allen Cell Collection | Tutorial
The Allen Cell Collection is a complete list of all the cell lines we’ve generated. It includes quality control data, gene editing methods, SOPs for the correct use of our cells, and more.
- Video
Allen Human Brain Atlas | Tutorial
Overview of the Allen Human Brain Atlas
- Video
Allen Brain Observatory: Two-Photon Dataset | Tutorial
Guided walkthrough on how to work with the Visual Coding Two-Photon Dataset from the Allen Institute for Brain Science
- Video
Allen Brain Observatory: Neuropixels Dataset | Tutorial
A guided walkthrough showing how to access the Neuropixels dataset
- Video
Common Coordinate Framework | Tutorial
Discover how to use the Common Coordinate Framework.
- Video
Cell Types Database and Transcriptomic Explorer | Tutorial
The Allen Cell Type Database and Transcriptomic Explorer presents multimodal cell type data and taxonomies related to mice and human brains.
- Video
MICrONS Explorer: Neuroglancer | Tutorial
Learn how to visualize and interact with our datasets using neuroglancer.
- Video
MICrONS Explorer: Adding Annotations | Tutorial
Learn how users can add annotations of different types to the dataset using an Annotation layer.
- Video
MICrONS Explorer: Analyzing and Visualizing Meshes | Tutorial
Learn how to make beautiful visualizations and extract relevant shape and morphology features using 3D segmentation in mesh form.
- Video
MICrONS Explorer: Downloading Images and Segmentations
In this tutorial, you’ll learn about downloading images and segmentations from the MICrONS Explorer.
- Video
ExA-SPIM | Scientific Overview
A high-level explanation of the protocols necessary to implement the Expansion Selective Plane Illumination Microscopy (ExA–SPIM) pipeline
- Video
Setting up the WTC parental line for cardiac differentiation
Helpful tips for setting up the WTC parental line for cardiac differentiation
- Video
Techniques while working with Matrigel
Helpful tips while working with Matrigel.
- Video
Cryopreservation of clonal human iPS cell lines in 96-well plates
Helpful tips on how to cryopreserve clonal human iPS cells in 96-well plates.

Scientific Training and Tutorials

Explore All Science Resources

Science Programs at Allen Institute