Team

Staff Profiles

Derek Thirstrup, M.S.

Image Analyst

derekt@alleninstitute.org

Derek Thirstrup joined the Allen Institute for Cell Science in May 2016 and currently serves as an image analyst in the AICS Microscopy & Image Analysis group. The group utilizes advanced microscopy methods to study how GFP tagged protein structures change as stem cells undergo processes such as cell differentiation. Derek received his BS in Chemistry from South Dakota School of Mines and Technology.  He was involved in an undergraduate student research project studying the distribution of environmental lead pollution on school playgrounds.  Derek received his master’s degree from the University of Washington in 2004, majoring in Analytical Chemistry. His research interests include building 2D & 3D image segmentation pipelines, cell biology, and development of quantitative IF/IHC tissue pathology assays.  From 2013 to April 2016, he worked as an image processing scientist implementing novel tissue pathology assays to rank combination chemotherapy agent potencies from arrayed microdose injections while at a local Seattle precision oncology personalized medicine startup, Presage Biosciences. From 2008 to 2013, he worked as a Research Scientist at the University of Washington in the Department of Laboratory Medicine on proteomic biomarker discovery assays utilizing aptamer affinity reagents modified with hydrophobic side chain moieties.  From 2004 to 2008, he worked on a reverse transfection RNAi cell microarray project at the Fred Hutchinson Cancer Research Center in Seattle.

 

Selected Publications

CellProfiler 3.0: Next-generation image processing for biology

PLOS | Biology
July 3, 2018

McQuin C, Goodman A, Chernyshev V, Kamentsky L, Cimini BA, Karhohs KW, Doan M, Ding L, Rafelski SM, Thirstrup D, Wiegraebe W, Singh S, Becker T, Caicedo JC, Carpenter AE

Multidrug Analyses in Patients Distinguish Efficacious Cancer Agents Based on Both Tumor Cell Killing and Immunomodulation

Cancer Research
March 31, 2017

Frazier JP, Bertout JA, Kerwin WS, Moreno-Gonzalez A, Casalini JR, Grenley MO, Beirne E, Watts KL, Keener A, Thirstrup DJ, Tretyak I, Ditzler SH, Tripp CD, Choy K, Gillings S, Breit MN, Meleo KA, Rizzo V, Herrera CL, Perry JA, Amaravadi RK, Olson JM, Klinghoffer RA

Minimally invasive in tumor multidrug comparative analysis with contrast-enhanced MRI in mice

Magnetic Resonance in Medicine
September 2016

Kerwin WS, Tretyak I, Grenley MO, You S, Hatton BA, Moreno-Gonzalez A, Thirstrup DJ, Klinghoffer RA

A Platform for Rapid, Quantitative Assessment of Multiple Drug Combinations Simultaneously in Solid Tumors In Vivo

PLoS One
June 30, 2016

Dey J, Kerwin WS, Grenley MO, Casalini JR, Tretyak I, Ditzler SH, Thurstrup DJ, Frazier JP, Pierce DW, Carleton M, Klinghoffer RA

Establishment and characterization of a canine soft tissue sarcoma patient-derived xenograft model

Veterinary and Comparative Oncology
March 18, 2016

Frazier JP, Beirne E, Ditzler SH, Tretyak I, Casalini JR, Thirstrup DJ, Knoblaugh S, Ward JG, Tripp CD, Klinghoffer RA

A technology platform to assess multiple cancer agents simultaneously within a patient's tumor

Science Translational Medicine
April 22, 2015

Klinghoffer RA, Bahrami SB, Hatton BA, Frazier JP, Moreno-Gonzalez A, Strand AD, Kerwin WS, Casalini JR, Thirstrup DJ, You S, Morris SM, Watts KL, Veiseh M, Grenley MO, Tretyak I, Dey J, Carleton M, Beirne E, Pedro KD, Ditzler SH, Girard EJ, Deckwerth TL, Bertout JA, Meleo KA, Filvaroff EH, Chopra R, Press OW, Olson JM

MyoD is a tumor suppressor gene in medulloblastoma

Cancer Research
November 15, 2013

Dey J, Dubuc AM, Pedro KD, Thirstrup D, Mecham B, Northcott PA, Wu X, Shih D, Tapscott SJ, LeBlanc M, Taylor MD, Olson JM